Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AC023932.2-201ENST00000603176 175 ntBASIC0.43□□□□□ -2.34
SLC44A3Q8N4M1 AC005520.4-201ENST00000604337 90 ntBASIC0.43□□□□□ -2.34
SLC44A3Q8N4M1 MIR499B-201ENST00000636498 73 ntBASIC0.43□□□□□ -2.34
SLC44A3Q8N4M1 SNORA33.1-201ENST00000364957 130 ntBASIC0.42□□□□□ -2.34
SLC44A3Q8N4M1 RNU6-800P-201ENST00000384473 103 ntBASIC0.42□□□□□ -2.34
SLC44A3Q8N4M1 MIR1265-201ENST00000408444 86 ntBASIC0.42□□□□□ -2.34
SLC44A3Q8N4M1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
SLC44A3Q8N4M1 SNORA15B-2-201ENST00000384058 135 ntBASIC0.41□□□□□ -2.34
SLC44A3Q8N4M1 SNORA15B-1-201ENST00000384334 135 ntBASIC0.41□□□□□ -2.34
SLC44A3Q8N4M1 RNU6-1162P-201ENST00000384443 104 ntBASIC0.41□□□□□ -2.34
SLC44A3Q8N4M1 MTND4LP1-201ENST00000446263 157 ntBASIC0.41□□□□□ -2.34
SLC44A3Q8N4M1 SNORA25.4-201ENST00000363666 124 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-815P-201ENST00000384080 113 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-127P-201ENST00000390897 107 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-630P-201ENST00000391258 106 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 RNU7-129P-201ENST00000516128 62 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 RN7SL660P-201ENST00000614852 299 ntBASIC0.4□□□□□ -2.35
SLC44A3Q8N4M1 SNORA9.1-201ENST00000362412 131 ntBASIC0.39□□□□□ -2.35
SLC44A3Q8N4M1 MIR329-2-201ENST00000385029 84 ntBASIC0.39□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-788P-201ENST00000390967 104 ntBASIC0.39□□□□□ -2.35
SLC44A3Q8N4M1 AC084368.1-201ENST00000620935 65 ntBASIC0.39□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-668P-201ENST00000364180 107 ntBASIC0.38□□□□□ -2.35
SLC44A3Q8N4M1 Y_RNA.375-201ENST00000365625 101 ntBASIC0.38□□□□□ -2.35
SLC44A3Q8N4M1 MIR548H2-201ENST00000408874 88 ntBASIC0.37□□□□□ -2.35
SLC44A3Q8N4M1 AC108740.1-201ENST00000498629 225 ntBASIC0.37□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-782P-201ENST00000516852 104 ntBASIC0.37□□□□□ -2.35
SLC44A3Q8N4M1 AC069113.3-201ENST00000521019 150 ntBASIC0.37□□□□□ -2.35
SLC44A3Q8N4M1 AC090617.8-201ENST00000623339 167 ntBASIC0.37□□□□□ -2.35
SLC44A3Q8N4M1 MIR106A-201ENST00000384870 81 ntBASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-1089P-201ENST00000516473 104 ntBASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 U2.7-201ENST00000619197 100 ntBASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 AL627230.5-201ENST00000619807 58 ntBASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 MIR6759-201ENST00000638110 65 ntBASIC0.36□□□□□ -2.35
SLC44A3Q8N4M1 AC090625.1-201ENST00000357130 210 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-471P-201ENST00000383944 106 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 SNORA75.1-201ENST00000391130 148 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 RNU6-337P-201ENST00000391243 106 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 SNORD2-201ENST00000459163 69 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 SCARNA11.2-201ENST00000517183 154 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 MIR4636-201ENST00000582271 80 ntBASIC0.35□□□□□ -2.35
SLC44A3Q8N4M1 RNA5SP215-201ENST00000363440 122 ntBASIC0.33□□□□□ -2.36
SLC44A3Q8N4M1 RNU6-1036P-201ENST00000383959 104 ntBASIC0.33□□□□□ -2.36
SLC44A3Q8N4M1 MIR4511-201ENST00000582784 87 ntBASIC0.33□□□□□ -2.36
SLC44A3Q8N4M1 MIR6773-201ENST00000612812 74 ntBASIC0.33□□□□□ -2.36
SLC44A3Q8N4M1 RNU7-174P-201ENST00000516248 59 ntBASIC0.32□□□□□ -2.36
SLC44A3Q8N4M1 RNU6-502P-201ENST00000362419 108 ntBASIC0.31□□□□□ -2.36
SLC44A3Q8N4M1 RNA5SP299-201ENST00000391203 116 ntBASIC0.31□□□□□ -2.36
SLC44A3Q8N4M1 U6.96-201ENST00000636425 70 ntBASIC0.31□□□□□ -2.36
SLC44A3Q8N4M1 MIRLET7B-201ENST00000385140 83 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 RNU6-542P-201ENST00000516405 103 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 CYP3A54P-201ENST00000566950 75 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 AC103706.3-201ENST00000636297 85 ntBASIC0.3□□□□□ -2.36
SLC44A3Q8N4M1 SNORD115-25-201ENST00000362619 82 ntBASIC0.29□□□□□ -2.36
SLC44A3Q8N4M1 MIR5589-201ENST00000579442 60 ntBASIC0.29□□□□□ -2.36
SLC44A3Q8N4M1 Y_RNA.340-201ENST00000365330 92 ntBASIC0.28□□□□□ -2.36
SLC44A3Q8N4M1 MIR643-201ENST00000385267 97 ntBASIC0.28□□□□□ -2.36
SLC44A3Q8N4M1 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
SLC44A3Q8N4M1 MIR4315-1-201ENST00000636800 73 ntBASIC0.28□□□□□ -2.36
SLC44A3Q8N4M1 MIR4315-2-201ENST00000640925 73 ntBASIC0.28□□□□□ -2.36
SLC44A3Q8N4M1 SNORA42.1-201ENST00000363515 137 ntBASIC0.27□□□□□ -2.37
SLC44A3Q8N4M1 SCARNA21.1-201ENST00000515996 128 ntBASIC0.27□□□□□ -2.37
SLC44A3Q8N4M1 U4.4-201ENST00000620626 117 ntBASIC0.27□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-698P-201ENST00000363523 107 ntBASIC0.26□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-34P-201ENST00000364874 107 ntBASIC0.26□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-669P-201ENST00000365575 107 ntBASIC0.26□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-180P-201ENST00000516697 61 ntBASIC0.26□□□□□ -2.37
SLC44A3Q8N4M1 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.26□□□□□ -2.37
SLC44A3Q8N4M1 MIR1255B2-201ENST00000408618 67 ntBASIC0.25□□□□□ -2.37
SLC44A3Q8N4M1 snoU13.19-201ENST00000459148 104 ntBASIC0.25□□□□□ -2.37
SLC44A3Q8N4M1 AC125388.1-201ENST00000459631 156 ntBASIC0.25□□□□□ -2.37
SLC44A3Q8N4M1 RNA5SP98-201ENST00000363158 137 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 SNORD115-23-201ENST00000364461 82 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR548C-201ENST00000384815 97 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR517B-201ENST00000385102 67 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 AC110620.1-201ENST00000416042 228 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 CR383656.4-201ENST00000546909 122 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR5190-201ENST00000581537 80 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR548V-201ENST00000584165 80 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR4743-201ENST00000584576 69 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR6514-201ENST00000622549 70 ntBASIC0.24□□□□□ -2.37
SLC44A3Q8N4M1 MIR148A-201ENST00000362215 68 ntBASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 AL021921.1-201ENST00000442774 93 ntBASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-518P-201ENST00000516056 96 ntBASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 MIR4802-201ENST00000581881 80 ntBASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.23□□□□□ -2.37
SLC44A3Q8N4M1 RNU6-302P-201ENST00000365249 107 ntBASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 MIR519A2-201ENST00000384990 87 ntBASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 AP000676.1-201ENST00000533307 52 ntBASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 AC104408.1-201ENST00000605241 170 ntBASIC0.22□□□□□ -2.37
SLC44A3Q8N4M1 MIR9-2-201ENST00000384838 87 ntBASIC0.21□□□□□ -2.38
SLC44A3Q8N4M1 MIR630-201ENST00000384957 97 ntBASIC0.21□□□□□ -2.38
SLC44A3Q8N4M1 RNU6-1246P-201ENST00000391064 107 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 362 ms