Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MIR664B-201ENST00000626756 61 ntBASIC-1.76□□□□□ -2.69
RFC3P40938 RNU6-574P-201ENST00000384265 107 ntBASIC-1.77□□□□□ -2.69
RFC3P40938 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.77□□□□□ -2.69
RFC3P40938 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.77□□□□□ -2.69
RFC3P40938 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.77□□□□□ -2.69
RFC3P40938 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.77□□□□□ -2.69
RFC3P40938 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 MIR519A2-201ENST00000384990 87 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 MTND4LP9-201ENST00000427694 174 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 RNU7-154P-201ENST00000516194 62 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 RNU6-426P-201ENST00000516464 97 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 MIR4490-201ENST00000582647 84 ntBASIC-1.78□□□□□ -2.69
RFC3P40938 RNU6-379P-201ENST00000363813 104 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 RNU6-119P-201ENST00000364882 107 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 MIR521-2-201ENST00000384818 87 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 RPL35AP4-201ENST00000412007 102 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 RNU6-518P-201ENST00000516056 96 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 RNU6-980P-201ENST00000516925 103 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 AP002795.1-201ENST00000534879 84 ntBASIC-1.79□□□□□ -2.7
RFC3P40938 SNORD115-27-201ENST00000364430 82 ntBASIC-1.8□□□□□ -2.7
RFC3P40938 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.8□□□□□ -2.7
RFC3P40938 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.8□□□□□ -2.7
RFC3P40938 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.8□□□□□ -2.7
RFC3P40938 MIR5683-201ENST00000636514 76 ntBASIC-1.8□□□□□ -2.7
RFC3P40938 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.81□□□□□ -2.7
RFC3P40938 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.81□□□□□ -2.7
RFC3P40938 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 RNU6-463P-201ENST00000384340 107 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 RNU7-88P-201ENST00000458752 63 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 RNU6-795P-201ENST00000516323 103 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 MIR3139-201ENST00000579145 76 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.82□□□□□ -2.7
RFC3P40938 U6.81-201ENST00000612550 106 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 AC012531.4-201ENST00000616509 177 ntBASIC-1.82□□□□□ -2.7
RFC3P40938 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.83□□□□□ -2.7
RFC3P40938 SNORA19.1-201ENST00000410656 129 ntBASIC-1.83□□□□□ -2.7
RFC3P40938 AC090616.4-201ENST00000448026 115 ntBASIC-1.83□□□□□ -2.7
RFC3P40938 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.83□□□□□ -2.7
RFC3P40938 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.83□□□□□ -2.7
RFC3P40938 SNORD58A-201ENST00000383875 65 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 SNORD19-201ENST00000391191 68 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 RNU6-972P-201ENST00000391208 107 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 RNU6-168P-201ENST00000516189 101 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 RNU6-388P-201ENST00000517012 105 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 RNU6-389P-201ENST00000517048 105 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 MTND5P41-201ENST00000517498 206 ntBASIC-1.84□□□□□ -2.7
RFC3P40938 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.85□□□□□ -2.71
RFC3P40938 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.85□□□□□ -2.71
RFC3P40938 SNORA40-201ENST00000388090 126 ntBASIC-1.85□□□□□ -2.71
RFC3P40938 AL353621.2-201ENST00000605340 133 ntBASIC-1.85□□□□□ -2.71
RFC3P40938 RNU7-107P-201ENST00000459121 61 ntBASIC-1.86□□□□□ -2.71
RFC3P40938 U7.5-201ENST00000517224 61 ntBASIC-1.86□□□□□ -2.71
RFC3P40938 MIR6739-201ENST00000622461 75 ntBASIC-1.86□□□□□ -2.71
RFC3P40938 MIR3914-2-201ENST00000637339 95 ntBASIC-1.86□□□□□ -2.71
RFC3P40938 RNA5SP405-201ENST00000363059 114 ntBASIC-1.87□□□□□ -2.71
RFC3P40938 MIR4796-201ENST00000580742 81 ntBASIC-1.87□□□□□ -2.71
RFC3P40938 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 RNU6-887P-201ENST00000410660 100 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 AC018880.2-201ENST00000414265 201 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 AL021921.1-201ENST00000442774 93 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 RNU6-752P-201ENST00000516376 102 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.88□□□□□ -2.71
RFC3P40938 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.89□□□□□ -2.71
RFC3P40938 RNU6-694P-201ENST00000364071 147 ntBASIC-1.89□□□□□ -2.71
RFC3P40938 MT-TM-201ENST00000387377 68 ntBASIC-1.89□□□□□ -2.71
RFC3P40938 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.89□□□□□ -2.71
RFC3P40938 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.89□□□□□ -2.71
RFC3P40938 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 MT-TG-201ENST00000387429 68 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 RNU6-400P-201ENST00000391173 106 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 MIR548Q-201ENST00000408404 100 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 SCARNA23-201ENST00000516060 130 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 RNU6-182P-201ENST00000516970 105 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.9□□□□□ -2.71
RFC3P40938 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.9□□□□□ -2.71
RFC3P40938 RNU6-774P-201ENST00000363238 107 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 SNORD116-10-201ENST00000363791 102 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 MIR548A3-201ENST00000385297 97 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 RNU6-257P-201ENST00000410238 98 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 SNORD33.1-201ENST00000516213 88 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 U6.95-201ENST00000636931 70 ntBASIC-1.91□□□□□ -2.72
RFC3P40938 RNU6-246P-201ENST00000384702 107 ntBASIC-1.92□□□□□ -2.72
RFC3P40938 MIR548AG1-201ENST00000579932 66 ntBASIC-1.92□□□□□ -2.72
RFC3P40938 RNU6-194P-201ENST00000363862 105 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 MIR1236-201ENST00000408340 102 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 RNU6-904P-201ENST00000516206 101 ntBASIC-1.93□□□□□ -2.72
RFC3P40938 SNORD54-201ENST00000459159 67 ntBASIC-1.94□□□□□ -2.72
RFC3P40938 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.94□□□□□ -2.72
RFC3P40938 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.95□□□□□ -2.72
RFC3P40938 RNU6-886P-201ENST00000384319 105 ntBASIC-1.95□□□□□ -2.72
RFC3P40938 RNU6-79P-201ENST00000362511 107 ntBASIC-1.96□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms