Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SNORA18.5-201ENST00000516616 101 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 AC104996.3-201ENST00000590718 94 ntBASIC-1.15□□□□□ -2.59
SHANK3Q9BYB0 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 SNORD58A-201ENST00000383875 65 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 RNU6-80P-201ENST00000384195 107 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 SNORA26.4-201ENST00000391188 123 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 RNU6-972P-201ENST00000391208 107 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 MIR1255B2-201ENST00000408618 67 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 AL500527.2-201ENST00000454105 95 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 RNU6-274P-201ENST00000459566 107 ntBASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.16□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.17□□□□□ -2.6
SHANK3Q9BYB0 RNU7-154P-201ENST00000516194 62 ntBASIC-1.17□□□□□ -2.6
SHANK3Q9BYB0 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-990P-201ENST00000364385 104 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 MIR3657-201ENST00000584818 117 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 AC090617.8-201ENST00000623339 167 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-681P-201ENST00000364012 104 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNA5SP292-201ENST00000390974 118 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 RNU6-706P-201ENST00000517229 104 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 AC103810.7-201ENST00000607821 91 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 MIR6888-201ENST00000621977 67 ntBASIC-1.18□□□□□ -2.6
SHANK3Q9BYB0 AL157777.2-201ENST00000258070 137 ntBASIC-1.19□□□□□ -2.6
SHANK3Q9BYB0 RNU5F-1-201ENST00000362507 117 ntBASIC-1.19□□□□□ -2.6
SHANK3Q9BYB0 SNORA2.1-201ENST00000363089 137 ntBASIC-1.19□□□□□ -2.6
SHANK3Q9BYB0 SNORD115-33-201ENST00000363723 82 ntBASIC-1.19□□□□□ -2.6
SHANK3Q9BYB0 RNU6-772P-201ENST00000516042 105 ntBASIC-1.19□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 RNU6-694P-201ENST00000364071 147 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 RNU6-382P-201ENST00000365181 106 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 MIR203A-201ENST00000384836 110 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 SNORA40-201ENST00000388090 126 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 snoU13.17-201ENST00000458802 104 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 RNU6-426P-201ENST00000516464 97 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 MIR1246-201ENST00000636535 73 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 RNU6-463P-201ENST00000384340 107 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 MIR569-201ENST00000385228 96 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 MTND4LP9-201ENST00000427694 174 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 MIR4464-201ENST00000580818 92 ntBASIC-1.2□□□□□ -2.6
SHANK3Q9BYB0 RNU6-574P-201ENST00000384265 107 ntBASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 MIR548I1-201ENST00000408810 149 ntBASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 RNU6-887P-201ENST00000410660 100 ntBASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 RNU6-412P-201ENST00000516434 106 ntBASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 RNU6-182P-201ENST00000516970 105 ntBASIC-1.21□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.22□□□□□ -2.6
SHANK3Q9BYB0 RNU6-388P-201ENST00000517012 105 ntBASIC-1.22□□□□□ -2.6
SHANK3Q9BYB0 RNU6-389P-201ENST00000517048 105 ntBASIC-1.22□□□□□ -2.6
SHANK3Q9BYB0 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.22□□□□□ -2.6
SHANK3Q9BYB0 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 RNA5SP147-201ENST00000516493 109 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 MIR4777-201ENST00000583710 86 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 MIR29B1-201ENST00000385015 81 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.23□□□□□ -2.61
SHANK3Q9BYB0 RNU6-824P-201ENST00000363724 104 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 SNORA33.1-201ENST00000364957 130 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 MIR519A2-201ENST00000384990 87 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 MIR1236-201ENST00000408340 102 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 RNU6-732P-201ENST00000516033 103 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 AC138207.3-201ENST00000585289 166 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 AL035470.1-201ENST00000622571 220 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 MIR4773-1-201ENST00000637203 78 ntBASIC-1.24□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.25□□□□□ -2.61
SHANK3Q9BYB0 SCARNA23-201ENST00000516060 130 ntBASIC-1.25□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 RNU6-804P-201ENST00000384286 107 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 SNORA19.1-201ENST00000410656 129 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 RNA5SP272-201ENST00000516095 111 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 MIR4490-201ENST00000582647 84 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 AC132825.6-201ENST00000638861 357 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 SNORD116-10-201ENST00000363791 102 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 MIR548A3-201ENST00000385297 97 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 RNU6-576P-201ENST00000390854 102 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.26□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.27□□□□□ -2.61
SHANK3Q9BYB0 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.27□□□□□ -2.61
SHANK3Q9BYB0 MIR527-201ENST00000385244 85 ntBASIC-1.27□□□□□ -2.61
SHANK3Q9BYB0 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.28□□□□□ -2.61
SHANK3Q9BYB0 RNU6-752P-201ENST00000516376 102 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 MIR6818-201ENST00000621576 65 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 SNORD63.1-201ENST00000516178 80 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 RNU6-795P-201ENST00000516323 103 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 RNU6-479P-201ENST00000516348 105 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 RNU6-537P-201ENST00000517277 103 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 MIR4796-201ENST00000580742 81 ntBASIC-1.29□□□□□ -2.62
SHANK3Q9BYB0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms