Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SNORD124-201ENST00000459577 104 ntBASIC1.55□□□□□ -2.16
SH3RF1Q7Z6J0 SNORA40.16-201ENST00000517238 121 ntBASIC1.55□□□□□ -2.16
SH3RF1Q7Z6J0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SH3RF1Q7Z6J0 Y_RNA.407-201ENST00000383986 113 ntBASIC1.54□□□□□ -2.16
SH3RF1Q7Z6J0 MIR548E-201ENST00000408287 88 ntBASIC1.54□□□□□ -2.16
SH3RF1Q7Z6J0 SNORD116-16-201ENST00000384533 92 ntBASIC1.53□□□□□ -2.16
SH3RF1Q7Z6J0 RNA5SP227-201ENST00000516184 113 ntBASIC1.53□□□□□ -2.16
SH3RF1Q7Z6J0 MIR6828-201ENST00000636181 60 ntBASIC1.53□□□□□ -2.16
SH3RF1Q7Z6J0 SNORA9.1-201ENST00000362412 131 ntBASIC1.52□□□□□ -2.17
SH3RF1Q7Z6J0 Y_RNA.74-201ENST00000362911 99 ntBASIC1.52□□□□□ -2.17
SH3RF1Q7Z6J0 SNORA25.8-201ENST00000364831 128 ntBASIC1.52□□□□□ -2.17
SH3RF1Q7Z6J0 CYP3A54P-201ENST00000566950 75 ntBASIC1.52□□□□□ -2.17
SH3RF1Q7Z6J0 MIR548X-201ENST00000580069 75 ntBASIC1.52□□□□□ -2.17
SH3RF1Q7Z6J0 SNORD114-24-201ENST00000365029 72 ntBASIC1.51□□□□□ -2.17
SH3RF1Q7Z6J0 RNU6-997P-201ENST00000384725 107 ntBASIC1.51□□□□□ -2.17
SH3RF1Q7Z6J0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.51□□□□□ -2.17
SH3RF1Q7Z6J0 MIR548AE1-201ENST00000583292 70 ntBASIC1.51□□□□□ -2.17
SH3RF1Q7Z6J0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
SH3RF1Q7Z6J0 SNORD116.2-201ENST00000391251 93 ntBASIC1.5□□□□□ -2.17
SH3RF1Q7Z6J0 AL021921.1-201ENST00000442774 93 ntBASIC1.5□□□□□ -2.17
SH3RF1Q7Z6J0 MIR7110-201ENST00000612638 86 ntBASIC1.5□□□□□ -2.17
SH3RF1Q7Z6J0 MIR6767-201ENST00000637302 66 ntBASIC1.5□□□□□ -2.17
SH3RF1Q7Z6J0 RNU4-45P-201ENST00000365469 141 ntBASIC1.49□□□□□ -2.17
SH3RF1Q7Z6J0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SH3RF1Q7Z6J0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.49□□□□□ -2.17
SH3RF1Q7Z6J0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
SH3RF1Q7Z6J0 MIR26B-201ENST00000362251 77 ntBASIC1.48□□□□□ -2.17
SH3RF1Q7Z6J0 AC011195.1-201ENST00000578177 177 ntBASIC1.48□□□□□ -2.17
SH3RF1Q7Z6J0 MIR3660-201ENST00000584845 100 ntBASIC1.48□□□□□ -2.17
SH3RF1Q7Z6J0 Y_RNA.282-201ENST00000364793 102 ntBASIC1.47□□□□□ -2.17
SH3RF1Q7Z6J0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.47□□□□□ -2.17
SH3RF1Q7Z6J0 RNA5SP436-201ENST00000516020 115 ntBASIC1.47□□□□□ -2.17
SH3RF1Q7Z6J0 RNU6-1223P-201ENST00000517124 104 ntBASIC1.47□□□□□ -2.17
SH3RF1Q7Z6J0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR598-201ENST00000384868 97 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR516B1-201ENST00000385211 90 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR618-201ENST00000385287 98 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 SNORA40B-201ENST00000385573 128 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR548J-201ENST00000408833 112 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 AC006210.1-201ENST00000424882 111 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 RNA5SP255-201ENST00000516370 107 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR6788-201ENST00000618842 66 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 AC090617.8-201ENST00000623339 167 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 U6.96-201ENST00000636425 70 ntBASIC1.46□□□□□ -2.18
SH3RF1Q7Z6J0 MIR18A-201ENST00000362310 71 ntBASIC1.45□□□□□ -2.18
SH3RF1Q7Z6J0 Y_RNA.374-201ENST00000365606 101 ntBASIC1.45□□□□□ -2.18
SH3RF1Q7Z6J0 RNU6-518P-201ENST00000516056 96 ntBASIC1.45□□□□□ -2.18
SH3RF1Q7Z6J0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SH3RF1Q7Z6J0 SNORD99-201ENST00000408612 74 ntBASIC1.44□□□□□ -2.18
SH3RF1Q7Z6J0 RNA5SP268-201ENST00000516828 124 ntBASIC1.44□□□□□ -2.18
SH3RF1Q7Z6J0 MIR151B-201ENST00000584249 96 ntBASIC1.44□□□□□ -2.18
SH3RF1Q7Z6J0 AC243829.3-201ENST00000622177 108 ntBASIC1.44□□□□□ -2.18
SH3RF1Q7Z6J0 RNU6-838P-201ENST00000363399 108 ntBASIC1.43□□□□□ -2.18
SH3RF1Q7Z6J0 RNU1-124P-201ENST00000363861 145 ntBASIC1.43□□□□□ -2.18
SH3RF1Q7Z6J0 SNORD110-201ENST00000408189 75 ntBASIC1.43□□□□□ -2.18
SH3RF1Q7Z6J0 RNA5SP404-201ENST00000517118 132 ntBASIC1.43□□□□□ -2.18
SH3RF1Q7Z6J0 MIR4473-201ENST00000583731 91 ntBASIC1.43□□□□□ -2.18
SH3RF1Q7Z6J0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.42□□□□□ -2.18
SH3RF1Q7Z6J0 MIR519A2-201ENST00000384990 87 ntBASIC1.42□□□□□ -2.18
SH3RF1Q7Z6J0 MIR527-201ENST00000385244 85 ntBASIC1.42□□□□□ -2.18
SH3RF1Q7Z6J0 SNORA36.1-201ENST00000363424 132 ntBASIC1.41□□□□□ -2.18
SH3RF1Q7Z6J0 RNU6-810P-201ENST00000364001 107 ntBASIC1.41□□□□□ -2.18
SH3RF1Q7Z6J0 AC243829.6-201ENST00000612652 106 ntBASIC1.41□□□□□ -2.18
SH3RF1Q7Z6J0 RNU6-246P-201ENST00000384702 107 ntBASIC1.4□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.4□□□□□ -2.19
SH3RF1Q7Z6J0 MIR1255B2-201ENST00000408618 67 ntBASIC1.4□□□□□ -2.19
SH3RF1Q7Z6J0 SNORD1B-201ENST00000363091 84 ntBASIC1.39□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6-939P-201ENST00000384634 107 ntBASIC1.39□□□□□ -2.19
SH3RF1Q7Z6J0 MIR545-201ENST00000385085 106 ntBASIC1.39□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6-955P-201ENST00000410497 104 ntBASIC1.38□□□□□ -2.19
SH3RF1Q7Z6J0 RNA5SP94-201ENST00000516917 108 ntBASIC1.38□□□□□ -2.19
SH3RF1Q7Z6J0 MIR548AG1-201ENST00000579932 66 ntBASIC1.38□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6-172P-201ENST00000411000 93 ntBASIC1.37□□□□□ -2.19
SH3RF1Q7Z6J0 RNA5SP222-201ENST00000411039 105 ntBASIC1.37□□□□□ -2.19
SH3RF1Q7Z6J0 MIR4490-201ENST00000582647 84 ntBASIC1.37□□□□□ -2.19
SH3RF1Q7Z6J0 AC244090.1-201ENST00000441884 93 ntBASIC1.36□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6-419P-201ENST00000517030 63 ntBASIC1.36□□□□□ -2.19
SH3RF1Q7Z6J0 MIR7107-201ENST00000611489 80 ntBASIC1.35□□□□□ -2.19
SH3RF1Q7Z6J0 SNORA70.25-201ENST00000612741 95 ntBASIC1.35□□□□□ -2.19
SH3RF1Q7Z6J0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
SH3RF1Q7Z6J0 MIR150-201ENST00000385048 84 ntBASIC1.34□□□□□ -2.19
SH3RF1Q7Z6J0 RNU6-337P-201ENST00000391243 106 ntBASIC1.34□□□□□ -2.19
SH3RF1Q7Z6J0 RNU7-154P-201ENST00000516194 62 ntBASIC1.34□□□□□ -2.19
SH3RF1Q7Z6J0 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.34□□□□□ -2.2
SH3RF1Q7Z6J0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SH3RF1Q7Z6J0 MIR20A-201ENST00000362279 71 ntBASIC1.33□□□□□ -2.2
SH3RF1Q7Z6J0 Y_RNA.109-201ENST00000363215 102 ntBASIC1.33□□□□□ -2.2
SH3RF1Q7Z6J0 HMGN2P22-201ENST00000427588 175 ntBASIC1.33□□□□□ -2.2
SH3RF1Q7Z6J0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.33□□□□□ -2.2
SH3RF1Q7Z6J0 SNORD115-25-201ENST00000362619 82 ntBASIC1.31□□□□□ -2.2
SH3RF1Q7Z6J0 RNU6-247P-201ENST00000362636 107 ntBASIC1.31□□□□□ -2.2
SH3RF1Q7Z6J0 RNU1-29P-201ENST00000606574 126 ntBASIC1.31□□□□□ -2.2
SH3RF1Q7Z6J0 MIR4295-201ENST00000585286 85 ntBASIC1.3□□□□□ -2.2
SH3RF1Q7Z6J0 MIR6773-201ENST00000612812 74 ntBASIC1.3□□□□□ -2.2
SH3RF1Q7Z6J0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.29□□□□□ -2.2
SH3RF1Q7Z6J0 SNORD2-201ENST00000459163 69 ntBASIC1.29□□□□□ -2.2
SH3RF1Q7Z6J0 AC087343.1-201ENST00000477341 475 ntBASIC1.29□□□□□ -2.2
SH3RF1Q7Z6J0 MIR5000-201ENST00000577717 103 ntBASIC1.29□□□□□ -2.2
SH3RF1Q7Z6J0 MIR5706-201ENST00000579841 80 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 215.8 ms