Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.7□□□□□ -2.68
HMGB1P09429 MTATP6P29-201ENST00000415057 132 ntBASIC-1.7□□□□□ -2.68
HMGB1P09429 MIR4320-201ENST00000636981 65 ntBASIC-1.7□□□□□ -2.68
HMGB1P09429 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.71□□□□□ -2.68
HMGB1P09429 RNU6-880P-201ENST00000384526 107 ntBASIC-1.71□□□□□ -2.68
HMGB1P09429 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.72□□□□□ -2.68
HMGB1P09429 RNU6-62P-201ENST00000516526 102 ntBASIC-1.72□□□□□ -2.68
HMGB1P09429 SNORA18.5-201ENST00000516616 101 ntBASIC-1.72□□□□□ -2.68
HMGB1P09429 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.72□□□□□ -2.68
HMGB1P09429 RNU4-32P-201ENST00000363404 141 ntBASIC-1.73□□□□□ -2.69
HMGB1P09429 RNU6-990P-201ENST00000364385 104 ntBASIC-1.73□□□□□ -2.69
HMGB1P09429 SNORD116-21-201ENST00000384507 92 ntBASIC-1.73□□□□□ -2.69
HMGB1P09429 SCARNA23-201ENST00000516060 130 ntBASIC-1.73□□□□□ -2.69
HMGB1P09429 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.74□□□□□ -2.69
HMGB1P09429 SNORA24B-201ENST00000384176 131 ntBASIC-1.74□□□□□ -2.69
HMGB1P09429 SNORD75.2-201ENST00000408784 58 ntBASIC-1.74□□□□□ -2.69
HMGB1P09429 AC021146.9-201ENST00000512503 156 ntBASIC-1.74□□□□□ -2.69
HMGB1P09429 RNU6-208P-201ENST00000362431 107 ntBASIC-1.75□□□□□ -2.69
HMGB1P09429 RNU6-972P-201ENST00000391208 107 ntBASIC-1.75□□□□□ -2.69
HMGB1P09429 RNU6-706P-201ENST00000517229 104 ntBASIC-1.75□□□□□ -2.69
HMGB1P09429 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.75□□□□□ -2.69
HMGB1P09429 AC132825.6-201ENST00000638861 357 ntBASIC-1.75□□□□□ -2.69
HMGB1P09429 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.76□□□□□ -2.69
HMGB1P09429 YWHAEP3-201ENST00000582767 121 ntBASIC-1.76□□□□□ -2.69
HMGB1P09429 SNORA19.1-201ENST00000410656 129 ntBASIC-1.77□□□□□ -2.69
HMGB1P09429 SNORD116-14-201ENST00000383894 92 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 SNORD116-17-201ENST00000383929 92 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 SNORD116-15-201ENST00000384445 92 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 SNORD116-19-201ENST00000384729 92 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 SNORD90-201ENST00000391145 111 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 U6.96-201ENST00000636425 70 ntBASIC-1.78□□□□□ -2.69
HMGB1P09429 SNORD58A-201ENST00000383875 65 ntBASIC-1.79□□□□□ -2.7
HMGB1P09429 MIR548I1-201ENST00000408810 149 ntBASIC-1.79□□□□□ -2.7
HMGB1P09429 RNU7-24P-201ENST00000458867 62 ntBASIC-1.79□□□□□ -2.7
HMGB1P09429 AC006254.2-201ENST00000603259 279 ntBASIC-1.79□□□□□ -2.7
HMGB1P09429 MIR409-201ENST00000362237 79 ntBASIC-1.8□□□□□ -2.7
HMGB1P09429 RNU6-887P-201ENST00000410660 100 ntBASIC-1.8□□□□□ -2.7
HMGB1P09429 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.8□□□□□ -2.7
HMGB1P09429 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.81□□□□□ -2.7
HMGB1P09429 SNORD57-201ENST00000448188 72 ntBASIC-1.81□□□□□ -2.7
HMGB1P09429 RNU6-479P-201ENST00000516348 105 ntBASIC-1.81□□□□□ -2.7
HMGB1P09429 MIR4464-201ENST00000580818 92 ntBASIC-1.81□□□□□ -2.7
HMGB1P09429 RNU5F-1-201ENST00000362507 117 ntBASIC-1.82□□□□□ -2.7
HMGB1P09429 RNU6-904P-201ENST00000516206 101 ntBASIC-1.82□□□□□ -2.7
HMGB1P09429 AC138207.3-201ENST00000585289 166 ntBASIC-1.82□□□□□ -2.7
HMGB1P09429 AL353803.5-201ENST00000599815 141 ntBASIC-1.83□□□□□ -2.7
HMGB1P09429 MIR4773-1-201ENST00000637203 78 ntBASIC-1.83□□□□□ -2.7
HMGB1P09429 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.84□□□□□ -2.7
HMGB1P09429 RNU6-382P-201ENST00000365181 106 ntBASIC-1.85□□□□□ -2.71
HMGB1P09429 AL445584.3-201ENST00000617173 78 ntBASIC-1.85□□□□□ -2.71
HMGB1P09429 MIR6888-201ENST00000621977 67 ntBASIC-1.85□□□□□ -2.71
HMGB1P09429 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.86□□□□□ -2.71
HMGB1P09429 RNU6-209P-201ENST00000384118 107 ntBASIC-1.86□□□□□ -2.71
HMGB1P09429 MIR29B1-201ENST00000385015 81 ntBASIC-1.86□□□□□ -2.71
HMGB1P09429 MIR3133-201ENST00000583157 78 ntBASIC-1.86□□□□□ -2.71
HMGB1P09429 RNU6-576P-201ENST00000390854 102 ntBASIC-1.87□□□□□ -2.71
HMGB1P09429 AC026421.1-201ENST00000519101 163 ntBASIC-1.87□□□□□ -2.71
HMGB1P09429 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.88□□□□□ -2.71
HMGB1P09429 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.88□□□□□ -2.71
HMGB1P09429 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 MIR1302-5-201ENST00000408164 150 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 RNA5SP266-201ENST00000410273 108 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 RNU4-61P-201ENST00000411243 107 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 RNA5SP476-201ENST00000516613 103 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 AC090617.8-201ENST00000623339 167 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.89□□□□□ -2.71
HMGB1P09429 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.89□□□□□ -2.71
HMGB1P09429 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.9□□□□□ -2.71
HMGB1P09429 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.9□□□□□ -2.71
HMGB1P09429 RNU7-134P-201ENST00000458997 64 ntBASIC-1.9□□□□□ -2.71
HMGB1P09429 MIR6818-201ENST00000621576 65 ntBASIC-1.9□□□□□ -2.71
HMGB1P09429 RNU6-924P-201ENST00000362926 108 ntBASIC-1.91□□□□□ -2.72
HMGB1P09429 SNORD116-10-201ENST00000363791 102 ntBASIC-1.91□□□□□ -2.72
HMGB1P09429 RNU6-746P-201ENST00000384112 109 ntBASIC-1.91□□□□□ -2.72
HMGB1P09429 SNORA26.4-201ENST00000391188 123 ntBASIC-1.91□□□□□ -2.72
HMGB1P09429 RNA5SP147-201ENST00000516493 109 ntBASIC-1.91□□□□□ -2.72
HMGB1P09429 SNORD115-33-201ENST00000363723 82 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 RNU6-260P-201ENST00000384092 107 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 MIR527-201ENST00000385244 85 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 SNORD63.1-201ENST00000516178 80 ntBASIC-1.92□□□□□ -2.72
HMGB1P09429 RNU6-774P-201ENST00000363238 107 ntBASIC-1.93□□□□□ -2.72
HMGB1P09429 MIR203A-201ENST00000384836 110 ntBASIC-1.93□□□□□ -2.72
HMGB1P09429 MIR6509-201ENST00000614603 85 ntBASIC-1.93□□□□□ -2.72
HMGB1P09429 HLA-S-202ENST00000425174 53 ntBASIC-1.94□□□□□ -2.72
HMGB1P09429 RNA5SP180-201ENST00000516181 101 ntBASIC-1.94□□□□□ -2.72
HMGB1P09429 HAR1A.1-201ENST00000459583 118 ntBASIC-1.95□□□□□ -2.72
HMGB1P09429 RNU7-61P-201ENST00000515897 61 ntBASIC-1.95□□□□□ -2.72
HMGB1P09429 RNA5SP461-201ENST00000516451 104 ntBASIC-1.95□□□□□ -2.72
HMGB1P09429 RNU6-824P-201ENST00000363724 104 ntBASIC-1.96□□□□□ -2.72
HMGB1P09429 RNU6-704P-201ENST00000364162 103 ntBASIC-1.96□□□□□ -2.72
HMGB1P09429 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.96□□□□□ -2.72
HMGB1P09429 MIR590-201ENST00000385008 97 ntBASIC-1.96□□□□□ -2.72
HMGB1P09429 snoU13.17-201ENST00000458802 104 ntBASIC-1.96□□□□□ -2.72
HMGB1P09429 MIR8485-201ENST00000401372 91 ntBASIC-1.97□□□□□ -2.72
HMGB1P09429 AL691482.2-201ENST00000457453 84 ntBASIC-1.97□□□□□ -2.72
HMGB1P09429 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.98□□□□□ -2.73
HMGB1P09429 MIR4796-201ENST00000580742 81 ntBASIC-1.98□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms