Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
USB1Q9BQ65 SNORA36.1-201ENST00000363424 132 ntBASIC1.52□□□□□ -2.17
USB1Q9BQ65 SNORD26-201ENST00000384147 75 ntBASIC1.52□□□□□ -2.17
USB1Q9BQ65 SNORD99-201ENST00000408612 74 ntBASIC1.52□□□□□ -2.17
USB1Q9BQ65 RNU7-174P-201ENST00000516248 59 ntBASIC1.52□□□□□ -2.17
USB1Q9BQ65 MIR4473-201ENST00000583731 91 ntBASIC1.52□□□□□ -2.17
USB1Q9BQ65 Y_RNA.125-201ENST00000363371 111 ntBASIC1.51□□□□□ -2.17
USB1Q9BQ65 Y_RNA.722-201ENST00000517279 114 ntBASIC1.51□□□□□ -2.17
USB1Q9BQ65 MIR4419B-201ENST00000577260 68 ntBASIC1.51□□□□□ -2.17
USB1Q9BQ65 MIR548AE1-201ENST00000583292 70 ntBASIC1.51□□□□□ -2.17
USB1Q9BQ65 RNA5SP190-201ENST00000365222 118 ntBASIC1.5□□□□□ -2.17
USB1Q9BQ65 RNA5SP458-201ENST00000516188 119 ntBASIC1.5□□□□□ -2.17
USB1Q9BQ65 MIR7978-201ENST00000636158 59 ntBASIC1.5□□□□□ -2.17
USB1Q9BQ65 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
USB1Q9BQ65 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
USB1Q9BQ65 RNU4-45P-201ENST00000365469 141 ntBASIC1.49□□□□□ -2.17
USB1Q9BQ65 RNA5SP404-201ENST00000517118 132 ntBASIC1.49□□□□□ -2.17
USB1Q9BQ65 RNU1-17P-201ENST00000363022 152 ntBASIC1.48□□□□□ -2.17
USB1Q9BQ65 MIR582-201ENST00000365731 98 ntBASIC1.48□□□□□ -2.17
USB1Q9BQ65 MIR517C-201ENST00000385103 95 ntBASIC1.48□□□□□ -2.17
USB1Q9BQ65 MIR618-201ENST00000385287 98 ntBASIC1.48□□□□□ -2.17
USB1Q9BQ65 MIR8081-201ENST00000611533 95 ntBASIC1.48□□□□□ -2.17
USB1Q9BQ65 RNU1-124P-201ENST00000363861 145 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 SNORD113-4-201ENST00000364802 75 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 SNORA25.8-201ENST00000364831 128 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 MIR548E-201ENST00000408287 88 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 RNA5SP94-201ENST00000516917 108 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 SNORD53B-201ENST00000577887 78 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 U4.4-201ENST00000620626 117 ntBASIC1.47□□□□□ -2.17
USB1Q9BQ65 RNA5SP99-201ENST00000364020 114 ntBASIC1.46□□□□□ -2.18
USB1Q9BQ65 RNU6-808P-201ENST00000391233 108 ntBASIC1.46□□□□□ -2.18
USB1Q9BQ65 MIR7107-201ENST00000611489 80 ntBASIC1.46□□□□□ -2.18
USB1Q9BQ65 MIR26B-201ENST00000362251 77 ntBASIC1.44□□□□□ -2.18
USB1Q9BQ65 RNU6-936P-201ENST00000384005 107 ntBASIC1.44□□□□□ -2.18
USB1Q9BQ65 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
USB1Q9BQ65 RNU6-955P-201ENST00000410497 104 ntBASIC1.42□□□□□ -2.18
USB1Q9BQ65 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
USB1Q9BQ65 SNORD13-201ENST00000459299 104 ntBASIC1.42□□□□□ -2.18
USB1Q9BQ65 SNORA70.25-201ENST00000612741 95 ntBASIC1.42□□□□□ -2.18
USB1Q9BQ65 MIR150-201ENST00000385048 84 ntBASIC1.41□□□□□ -2.18
USB1Q9BQ65 RNA5SP222-201ENST00000411039 105 ntBASIC1.41□□□□□ -2.18
USB1Q9BQ65 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.41□□□□□ -2.18
USB1Q9BQ65 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.41□□□□□ -2.18
USB1Q9BQ65 U6.96-201ENST00000636425 70 ntBASIC1.41□□□□□ -2.18
USB1Q9BQ65 Y_RNA.246-201ENST00000364495 108 ntBASIC1.4□□□□□ -2.19
USB1Q9BQ65 SNORA67.6-201ENST00000391093 99 ntBASIC1.4□□□□□ -2.19
USB1Q9BQ65 AL603825.1-201ENST00000438481 80 ntBASIC1.4□□□□□ -2.19
USB1Q9BQ65 MIR4752-201ENST00000579672 72 ntBASIC1.4□□□□□ -2.19
USB1Q9BQ65 BX248123.2-201ENST00000606318 124 ntBASIC1.4□□□□□ -2.19
USB1Q9BQ65 MIR378A-201ENST00000362177 66 ntBASIC1.39□□□□□ -2.19
USB1Q9BQ65 SNORA31.24-201ENST00000517232 57 ntBASIC1.39□□□□□ -2.19
USB1Q9BQ65 CYP3A54P-201ENST00000566950 75 ntBASIC1.39□□□□□ -2.19
USB1Q9BQ65 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
USB1Q9BQ65 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.39□□□□□ -2.19
USB1Q9BQ65 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
USB1Q9BQ65 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
USB1Q9BQ65 Y_RNA.325-201ENST00000365171 122 ntBASIC1.37□□□□□ -2.19
USB1Q9BQ65 RNU6-1184P-201ENST00000384588 108 ntBASIC1.37□□□□□ -2.19
USB1Q9BQ65 RNU6-520P-201ENST00000384717 104 ntBASIC1.37□□□□□ -2.19
USB1Q9BQ65 MIR516B1-201ENST00000385211 90 ntBASIC1.37□□□□□ -2.19
USB1Q9BQ65 AC108667.1-201ENST00000428618 249 ntBASIC1.37□□□□□ -2.19
USB1Q9BQ65 RNU6-1312P-201ENST00000362425 108 ntBASIC1.36□□□□□ -2.19
USB1Q9BQ65 SNORA41B-201ENST00000384785 128 ntBASIC1.35□□□□□ -2.19
USB1Q9BQ65 HMGN2P22-201ENST00000427588 175 ntBASIC1.35□□□□□ -2.19
USB1Q9BQ65 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.35□□□□□ -2.19
USB1Q9BQ65 MIR4498-201ENST00000577599 66 ntBASIC1.35□□□□□ -2.19
USB1Q9BQ65 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.35□□□□□ -2.19
USB1Q9BQ65 snoU13.31-201ENST00000607291 104 ntBASIC1.35□□□□□ -2.19
USB1Q9BQ65 AC243829.6-201ENST00000612652 106 ntBASIC1.35□□□□□ -2.19
USB1Q9BQ65 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
USB1Q9BQ65 SNORA9.1-201ENST00000362412 131 ntBASIC1.34□□□□□ -2.19
USB1Q9BQ65 Y_RNA.338-201ENST00000365320 114 ntBASIC1.34□□□□□ -2.19
USB1Q9BQ65 AL021921.1-201ENST00000442774 93 ntBASIC1.34□□□□□ -2.19
USB1Q9BQ65 AL353765.1-201ENST00000605514 183 ntBASIC1.34□□□□□ -2.19
USB1Q9BQ65 MIR20A-201ENST00000362279 71 ntBASIC1.33□□□□□ -2.2
USB1Q9BQ65 AC244090.1-201ENST00000441884 93 ntBASIC1.33□□□□□ -2.2
USB1Q9BQ65 MIR5706-201ENST00000579841 80 ntBASIC1.33□□□□□ -2.2
USB1Q9BQ65 RNU6-1246P-201ENST00000391064 107 ntBASIC1.32□□□□□ -2.2
USB1Q9BQ65 SNORA17.3-201ENST00000391159 129 ntBASIC1.32□□□□□ -2.2
USB1Q9BQ65 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
USB1Q9BQ65 RNU1-42P-201ENST00000364033 160 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 SNORA36.2-201ENST00000384004 127 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 MIR320A-201ENST00000385302 82 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 MIR1323-201ENST00000408090 73 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 RNU7-119P-201ENST00000459279 63 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 RNU6-518P-201ENST00000516056 96 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 AC090617.8-201ENST00000623339 167 ntBASIC1.31□□□□□ -2.2
USB1Q9BQ65 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.31□□□□□ -2.2
USB1Q9BQ65 RNA5SP517-201ENST00000364724 117 ntBASIC1.3□□□□□ -2.2
USB1Q9BQ65 RNU4-62P-201ENST00000410125 130 ntBASIC1.3□□□□□ -2.2
USB1Q9BQ65 AC069271.1-201ENST00000445577 156 ntBASIC1.3□□□□□ -2.2
USB1Q9BQ65 RNU1-29P-201ENST00000606574 126 ntBASIC1.3□□□□□ -2.2
USB1Q9BQ65 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.3□□□□□ -2.2
USB1Q9BQ65 RNY1P8-201ENST00000383970 114 ntBASIC1.29□□□□□ -2.2
USB1Q9BQ65 MIR1304-201ENST00000408243 91 ntBASIC1.29□□□□□ -2.2
USB1Q9BQ65 RNU6-1053P-201ENST00000515930 101 ntBASIC1.29□□□□□ -2.2
USB1Q9BQ65 MIR4303-201ENST00000581299 66 ntBASIC1.29□□□□□ -2.2
USB1Q9BQ65 MIR1255B2-201ENST00000408618 67 ntBASIC1.28□□□□□ -2.2
USB1Q9BQ65 RNU7-95P-201ENST00000459222 64 ntBASIC1.28□□□□□ -2.2
USB1Q9BQ65 Y_RNA.74-201ENST00000362911 99 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms