Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR652-201ENST00000385278 98 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 MIR876-201ENST00000401147 81 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 SNORD42B-201ENST00000458893 67 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 RNU6-168P-201ENST00000516189 101 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 uc_338.10-201ENST00000621872 182 ntBASIC0.02□□□□□ -2.41
USP28Q96RU2 U3.27-201ENST00000391237 200 ntBASIC0.01□□□□□ -2.41
USP28Q96RU2 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
USP28Q96RU2 MIR6514-201ENST00000622549 70 ntBASIC0□□□□□ -2.41
USP28Q96RU2 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 RNU6-929P-201ENST00000384429 107 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 MIR216B-201ENST00000390186 82 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 SNORA75.1-201ENST00000391130 148 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 snoU13.17-201ENST00000458802 104 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 RNU6-267P-201ENST00000516714 103 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 RNU6-175P-201ENST00000516896 107 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 MIR4796-201ENST00000580742 81 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 MIR4668-201ENST00000582284 70 ntBASIC-0.01□□□□□ -2.41
USP28Q96RU2 RNU6-180P-201ENST00000516697 61 ntBASIC-0.02□□□□□ -2.41
USP28Q96RU2 MIR371B-201ENST00000638082 66 ntBASIC-0.02□□□□□ -2.41
USP28Q96RU2 RNU6-49P-201ENST00000384256 107 ntBASIC-0.03□□□□□ -2.41
USP28Q96RU2 MIR5190-201ENST00000581537 80 ntBASIC-0.03□□□□□ -2.41
USP28Q96RU2 MIR4290-201ENST00000583807 95 ntBASIC-0.03□□□□□ -2.41
USP28Q96RU2 MIR2909-201ENST00000617113 69 ntBASIC-0.03□□□□□ -2.41
USP28Q96RU2 RNA5SP257-201ENST00000363023 116 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 RNU6-219P-201ENST00000364728 107 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 MIR582-201ENST00000365731 98 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 MIR1236-201ENST00000408340 102 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 RNU6-402P-201ENST00000410678 103 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 RNU7-165P-201ENST00000458864 60 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 RNU7-159P-201ENST00000459284 62 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 AC097510.1-201ENST00000510945 133 ntBASIC-0.04□□□□□ -2.42
USP28Q96RU2 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.05□□□□□ -2.42
USP28Q96RU2 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.05□□□□□ -2.42
USP28Q96RU2 MTATP6P29-201ENST00000415057 132 ntBASIC-0.05□□□□□ -2.42
USP28Q96RU2 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.05□□□□□ -2.42
USP28Q96RU2 MIR4743-201ENST00000584576 69 ntBASIC-0.05□□□□□ -2.42
USP28Q96RU2 RNU6-633P-201ENST00000362612 103 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 RNU6-495P-201ENST00000362995 107 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 SNORD114-29-201ENST00000364819 70 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 MIR519C-201ENST00000385053 87 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
USP28Q96RU2 MIR892B-201ENST00000401279 77 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.06□□□□□ -2.42
USP28Q96RU2 RNU6-824P-201ENST00000363724 104 ntBASIC-0.07□□□□□ -2.42
USP28Q96RU2 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.07□□□□□ -2.42
USP28Q96RU2 MIR548E-201ENST00000408287 88 ntBASIC-0.07□□□□□ -2.42
USP28Q96RU2 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.07□□□□□ -2.42
USP28Q96RU2 CR383656.4-201ENST00000546909 122 ntBASIC-0.07□□□□□ -2.42
USP28Q96RU2 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.07□□□□□ -2.42
USP28Q96RU2 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 RNU6-382P-201ENST00000365181 106 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 RNU6-497P-201ENST00000365316 104 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 SNORD116-22-201ENST00000384430 92 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 SNORA49-201ENST00000386157 136 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
USP28Q96RU2 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.08□□□□□ -2.42
USP28Q96RU2 MIR20A-201ENST00000362279 71 ntBASIC-0.09□□□□□ -2.42
USP28Q96RU2 RNU5F-1-201ENST00000362507 117 ntBASIC-0.09□□□□□ -2.42
USP28Q96RU2 RNU6-990P-201ENST00000364385 104 ntBASIC-0.09□□□□□ -2.42
USP28Q96RU2 RNY4P3-201ENST00000365254 95 ntBASIC-0.09□□□□□ -2.42
USP28Q96RU2 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
USP28Q96RU2 RNY4P30-201ENST00000410216 95 ntBASIC-0.09□□□□□ -2.42
USP28Q96RU2 SNORD75.2-201ENST00000408784 58 ntBASIC-0.1□□□□□ -2.43
USP28Q96RU2 AC244090.1-201ENST00000441884 93 ntBASIC-0.1□□□□□ -2.43
USP28Q96RU2 RNU6-844P-201ENST00000517175 102 ntBASIC-0.1□□□□□ -2.43
USP28Q96RU2 MIR6507-201ENST00000613630 70 ntBASIC-0.1□□□□□ -2.43
USP28Q96RU2 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.11□□□□□ -2.43
USP28Q96RU2 MIR548BB-201ENST00000626714 66 ntBASIC-0.11□□□□□ -2.43
USP28Q96RU2 MIR4773-1-201ENST00000637203 78 ntBASIC-0.11□□□□□ -2.43
USP28Q96RU2 MIR148A-201ENST00000362215 68 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 AC244250.2-201ENST00000418731 148 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 SNORA40.17-201ENST00000517256 115 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 AC145423.2-201ENST00000610631 239 ntBASIC-0.12□□□□□ -2.43
USP28Q96RU2 RNU6-675P-201ENST00000384236 104 ntBASIC-0.13□□□□□ -2.43
USP28Q96RU2 RNU7-24P-201ENST00000458867 62 ntBASIC-0.13□□□□□ -2.43
USP28Q96RU2 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.13□□□□□ -2.43
USP28Q96RU2 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.13□□□□□ -2.43
USP28Q96RU2 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.13□□□□□ -2.43
USP28Q96RU2 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 RNA5SP98-201ENST00000363158 137 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 SNORD114-4-201ENST00000363962 75 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 RNU6-302P-201ENST00000365249 107 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 MIR203A-201ENST00000384836 110 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 U6.81-201ENST00000612550 106 ntBASIC-0.14□□□□□ -2.43
USP28Q96RU2 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 MIR329-2-201ENST00000385029 84 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 snoU13.13-201ENST00000458842 104 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 AC093729.1-201ENST00000513074 128 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 RNA5SP285-201ENST00000516619 119 ntBASIC-0.15□□□□□ -2.43
USP28Q96RU2 RNU6-208P-201ENST00000362431 107 ntBASIC-0.16□□□□□ -2.44
USP28Q96RU2 SNORD115-37-201ENST00000363768 82 ntBASIC-0.16□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms