Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 RNU6-726P-201ENST00000364680 107 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 Y_RNA.374-201ENST00000365606 101 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 SNORA41B-201ENST00000384785 128 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 snoU13.13-201ENST00000458842 104 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 SNORD79.1-201ENST00000516069 84 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 RNU6-231P-201ENST00000517122 103 ntBASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.97□□□□□ -2.09
NKX2-3Q8TAU0 Y_RNA.178-201ENST00000363832 102 ntBASIC1.96□□□□□ -2.1
NKX2-3Q8TAU0 SNORA8.2-201ENST00000384372 139 ntBASIC1.96□□□□□ -2.1
NKX2-3Q8TAU0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.96□□□□□ -2.1
NKX2-3Q8TAU0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.96□□□□□ -2.1
NKX2-3Q8TAU0 MIR644A-201ENST00000385262 94 ntBASIC1.95□□□□□ -2.1
NKX2-3Q8TAU0 MIR758-201ENST00000390227 88 ntBASIC1.95□□□□□ -2.1
NKX2-3Q8TAU0 MIR1323-201ENST00000408090 73 ntBASIC1.95□□□□□ -2.1
NKX2-3Q8TAU0 MIR548F3-201ENST00000408509 87 ntBASIC1.95□□□□□ -2.1
NKX2-3Q8TAU0 SNORA33.1-201ENST00000364957 130 ntBASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 MIR517C-201ENST00000385103 95 ntBASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 RNU6-910P-201ENST00000390844 107 ntBASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 MIR548L-201ENST00000408303 86 ntBASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 RNU6-469P-201ENST00000516253 101 ntBASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
NKX2-3Q8TAU0 RNU5B-6P-201ENST00000516765 68 ntBASIC1.93□□□□□ -2.1
NKX2-3Q8TAU0 MIR548X-201ENST00000580069 75 ntBASIC1.93□□□□□ -2.1
NKX2-3Q8TAU0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.93□□□□□ -2.1
NKX2-3Q8TAU0 SNORD114-26-201ENST00000363543 72 ntBASIC1.92□□□□□ -2.1
NKX2-3Q8TAU0 Y_RNA.325-201ENST00000365171 122 ntBASIC1.92□□□□□ -2.1
NKX2-3Q8TAU0 RNA5SP102-201ENST00000516865 106 ntBASIC1.92□□□□□ -2.1
NKX2-3Q8TAU0 RNA5SP47-201ENST00000517230 109 ntBASIC1.92□□□□□ -2.1
NKX2-3Q8TAU0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.92□□□□□ -2.1
NKX2-3Q8TAU0 SNORA63.6-201ENST00000364921 119 ntBASIC1.91□□□□□ -2.1
NKX2-3Q8TAU0 SNORD12-201ENST00000391002 90 ntBASIC1.9□□□□□ -2.11
NKX2-3Q8TAU0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.9□□□□□ -2.11
NKX2-3Q8TAU0 SCARNA17.3-201ENST00000516381 125 ntBASIC1.9□□□□□ -2.11
NKX2-3Q8TAU0 Y_RNA.74-201ENST00000362911 99 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 SNORA25.8-201ENST00000364831 128 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 RNA5SP363-201ENST00000365072 115 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 SNORD116-16-201ENST00000384533 92 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 RNU6-269P-201ENST00000391077 97 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 SNORA40.16-201ENST00000517238 121 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 MIR6779-201ENST00000617283 64 ntBASIC1.89□□□□□ -2.11
NKX2-3Q8TAU0 SNORD18A-201ENST00000363753 72 ntBASIC1.88□□□□□ -2.11
NKX2-3Q8TAU0 RNU1-42P-201ENST00000364033 160 ntBASIC1.88□□□□□ -2.11
NKX2-3Q8TAU0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX2-3Q8TAU0 MIR3122-201ENST00000577243 73 ntBASIC1.88□□□□□ -2.11
NKX2-3Q8TAU0 MIR7110-201ENST00000612638 86 ntBASIC1.88□□□□□ -2.11
NKX2-3Q8TAU0 SNORA67.6-201ENST00000391093 99 ntBASIC1.87□□□□□ -2.11
NKX2-3Q8TAU0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
NKX2-3Q8TAU0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
NKX2-3Q8TAU0 SNORD116.2-201ENST00000391251 93 ntBASIC1.86□□□□□ -2.11
NKX2-3Q8TAU0 RNU1-92P-201ENST00000517017 135 ntBASIC1.86□□□□□ -2.11
NKX2-3Q8TAU0 MIR4421-201ENST00000578133 69 ntBASIC1.86□□□□□ -2.11
NKX2-3Q8TAU0 Y_RNA.407-201ENST00000383986 113 ntBASIC1.85□□□□□ -2.11
NKX2-3Q8TAU0 AL021921.1-201ENST00000442774 93 ntBASIC1.85□□□□□ -2.11
NKX2-3Q8TAU0 RNA5SP484-201ENST00000458857 111 ntBASIC1.85□□□□□ -2.11
NKX2-3Q8TAU0 AL162376.1-201ENST00000624117 175 ntBASIC1.85□□□□□ -2.11
NKX2-3Q8TAU0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 RNU6-838P-201ENST00000363399 108 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 SNORD114-22-201ENST00000365423 72 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 RNU6-716P-201ENST00000365621 103 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 MIR652-201ENST00000385278 98 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 SNORA70.22-201ENST00000517160 124 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 CYP3A54P-201ENST00000566950 75 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 MIR4285-201ENST00000581001 85 ntBASIC1.84□□□□□ -2.11
NKX2-3Q8TAU0 SNORA9.1-201ENST00000362412 131 ntBASIC1.83□□□□□ -2.12
NKX2-3Q8TAU0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
NKX2-3Q8TAU0 RNU6-1110P-201ENST00000516462 101 ntBASIC1.83□□□□□ -2.12
NKX2-3Q8TAU0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
NKX2-3Q8TAU0 SNORA40B-201ENST00000385573 128 ntBASIC1.82□□□□□ -2.12
NKX2-3Q8TAU0 SCARNA16.5-201ENST00000517114 183 ntBASIC1.82□□□□□ -2.12
NKX2-3Q8TAU0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
NKX2-3Q8TAU0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.81□□□□□ -2.12
NKX2-3Q8TAU0 RNU6-1246P-201ENST00000391064 107 ntBASIC1.81□□□□□ -2.12
NKX2-3Q8TAU0 MIR6515-201ENST00000619843 57 ntBASIC1.81□□□□□ -2.12
NKX2-3Q8TAU0 AL353770.2-201ENST00000620024 78 ntBASIC1.81□□□□□ -2.12
NKX2-3Q8TAU0 MIR548E-201ENST00000408287 88 ntBASIC1.8□□□□□ -2.12
NKX2-3Q8TAU0 SNORA31.24-201ENST00000517232 57 ntBASIC1.8□□□□□ -2.12
NKX2-3Q8TAU0 AC022709.1-201ENST00000615967 87 ntBASIC1.8□□□□□ -2.12
NKX2-3Q8TAU0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.8□□□□□ -2.12
NKX2-3Q8TAU0 Y_RNA.282-201ENST00000364793 102 ntBASIC1.79□□□□□ -2.12
NKX2-3Q8TAU0 MIR582-201ENST00000365731 98 ntBASIC1.79□□□□□ -2.12
NKX2-3Q8TAU0 MIR320A-201ENST00000385302 82 ntBASIC1.79□□□□□ -2.12
NKX2-3Q8TAU0 MIR3678-201ENST00000578455 94 ntBASIC1.79□□□□□ -2.12
NKX2-3Q8TAU0 MIR6828-201ENST00000636181 60 ntBASIC1.79□□□□□ -2.12
NKX2-3Q8TAU0 SNORD105-201ENST00000386910 85 ntBASIC1.78□□□□□ -2.12
NKX2-3Q8TAU0 MIR6078-201ENST00000611069 100 ntBASIC1.78□□□□□ -2.12
NKX2-3Q8TAU0 AC002429.1-201ENST00000437672 148 ntBASIC1.77□□□□□ -2.13
NKX2-3Q8TAU0 U7.7-201ENST00000459276 60 ntBASIC1.77□□□□□ -2.13
NKX2-3Q8TAU0 MIR545-201ENST00000385085 106 ntBASIC1.76□□□□□ -2.13
NKX2-3Q8TAU0 RNA5SP61-201ENST00000516453 100 ntBASIC1.76□□□□□ -2.13
NKX2-3Q8TAU0 U6.96-201ENST00000636425 70 ntBASIC1.76□□□□□ -2.13
NKX2-3Q8TAU0 MIR527-201ENST00000385244 85 ntBASIC1.75□□□□□ -2.13
NKX2-3Q8TAU0 MIR1304-201ENST00000408243 91 ntBASIC1.75□□□□□ -2.13
NKX2-3Q8TAU0 AL354695.1-201ENST00000427935 228 ntBASIC1.75□□□□□ -2.13
NKX2-3Q8TAU0 RNU6-518P-201ENST00000516056 96 ntBASIC1.75□□□□□ -2.13
NKX2-3Q8TAU0 RNU6-246P-201ENST00000384702 107 ntBASIC1.74□□□□□ -2.13
NKX2-3Q8TAU0 MIR516B1-201ENST00000385211 90 ntBASIC1.74□□□□□ -2.13
NKX2-3Q8TAU0 FABP5P4-201ENST00000437203 171 ntBASIC1.74□□□□□ -2.13
NKX2-3Q8TAU0 MIR548AE1-201ENST00000583292 70 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms