Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNA5SP163-201ENST00000410304 99 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 SNORA18.5-201ENST00000516616 101 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-719P-201ENST00000516671 104 ntBASIC-0.03□□□□□ -2.41
ZNF540Q8NDQ6 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-154P-201ENST00000384306 106 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 MIR106A-201ENST00000384870 81 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 FGF7P7-201ENST00000514120 227 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 AC145423.2-201ENST00000610631 239 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 AC084368.1-201ENST00000620935 65 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.04□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 MIR548U-201ENST00000390728 81 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 SNORA40.17-201ENST00000517256 115 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 MIR548AI-201ENST00000579940 88 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 MALAT1.1-201ENST00000618249 95 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 uc_338.10-201ENST00000621872 182 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 MIR6514-201ENST00000622549 70 ntBASIC-0.05□□□□□ -2.42
ZNF540Q8NDQ6 MIR655-201ENST00000362159 97 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 RNU4-32P-201ENST00000363404 141 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 MIR216B-201ENST00000390186 82 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 RNU7-159P-201ENST00000459284 62 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 AC097510.1-201ENST00000510945 133 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 RNU7-153P-201ENST00000516455 62 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-762P-201ENST00000517107 102 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 CR383656.4-201ENST00000546909 122 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 MIR6507-201ENST00000613630 70 ntBASIC-0.06□□□□□ -2.42
ZNF540Q8NDQ6 MIR148A-201ENST00000362215 68 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-495P-201ENST00000362995 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-219P-201ENST00000364728 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-32P-201ENST00000383948 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-13P-201ENST00000384248 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-12P-201ENST00000384604 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-41P-201ENST00000384741 107 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 MIR892B-201ENST00000401279 77 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 MIR548E-201ENST00000408287 88 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 snoU13.17-201ENST00000458802 104 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.07□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-153P-201ENST00000364422 104 ntBASIC-0.08□□□□□ -2.42
ZNF540Q8NDQ6 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
ZNF540Q8NDQ6 AC244250.2-201ENST00000418731 148 ntBASIC-0.08□□□□□ -2.42
ZNF540Q8NDQ6 SNORA40.13-201ENST00000516379 120 ntBASIC-0.08□□□□□ -2.42
ZNF540Q8NDQ6 MIR4796-201ENST00000580742 81 ntBASIC-0.08□□□□□ -2.42
ZNF540Q8NDQ6 RNU6-824P-201ENST00000363724 104 ntBASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 RNY1P7-201ENST00000384743 110 ntBASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 MIR4668-201ENST00000582284 70 ntBASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 MIR2052-201ENST00000636055 55 ntBASIC-0.09□□□□□ -2.42
ZNF540Q8NDQ6 SNORD114-29-201ENST00000364819 70 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 RNA5SP89-201ENST00000410300 108 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 AC244090.1-201ENST00000441884 93 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 RNU7-24P-201ENST00000458867 62 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-267P-201ENST00000516714 103 ntBASIC-0.1□□□□□ -2.43
ZNF540Q8NDQ6 MIR20A-201ENST00000362279 71 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-633P-201ENST00000362612 103 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-990P-201ENST00000364385 104 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-302P-201ENST00000365249 107 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-49P-201ENST00000384256 107 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 SNORD75.2-201ENST00000408784 58 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-168P-201ENST00000516189 101 ntBASIC-0.11□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-382P-201ENST00000365181 106 ntBASIC-0.12□□□□□ -2.43
ZNF540Q8NDQ6 MIR1236-201ENST00000408340 102 ntBASIC-0.12□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-46P-201ENST00000383860 107 ntBASIC-0.13□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-675P-201ENST00000384236 104 ntBASIC-0.13□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-402P-201ENST00000410678 103 ntBASIC-0.13□□□□□ -2.43
ZNF540Q8NDQ6 RNA5SP395-201ENST00000516567 118 ntBASIC-0.13□□□□□ -2.43
ZNF540Q8NDQ6 U6.81-201ENST00000612550 106 ntBASIC-0.13□□□□□ -2.43
ZNF540Q8NDQ6 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 RNA5SP98-201ENST00000363158 137 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 MIR9-2-201ENST00000384838 87 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 MIR519C-201ENST00000385053 87 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 MTATP6P29-201ENST00000415057 132 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 MIR6759-201ENST00000638110 65 ntBASIC-0.14□□□□□ -2.43
ZNF540Q8NDQ6 SNORA32.1-201ENST00000364514 115 ntBASIC-0.15□□□□□ -2.43
ZNF540Q8NDQ6 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.15□□□□□ -2.43
ZNF540Q8NDQ6 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.15□□□□□ -2.43
ZNF540Q8NDQ6 AL590491.3-201ENST00000610731 82 ntBASIC-0.15□□□□□ -2.43
ZNF540Q8NDQ6 RNU5F-1-201ENST00000362507 117 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-624P-201ENST00000363411 107 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 SNORD49B-201ENST00000365172 72 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 RNY4P3-201ENST00000365254 95 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 AC104692.1-201ENST00000472406 90 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-844P-201ENST00000517175 102 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 AC140658.3-201ENST00000567603 271 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 MIR548BB-201ENST00000626714 66 ntBASIC-0.16□□□□□ -2.44
ZNF540Q8NDQ6 RNU6-502P-201ENST00000362419 108 ntBASIC-0.17□□□□□ -2.44
ZNF540Q8NDQ6 SNORD114-4-201ENST00000363962 75 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 172.3 ms