Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-129P-201ENST00000391022 107 ntBASIC0.4□□□□□ -2.35
VPS53Q5VIR6 RNU6-592P-201ENST00000411333 103 ntBASIC0.4□□□□□ -2.35
VPS53Q5VIR6 HMGN2P22-201ENST00000427588 175 ntBASIC0.4□□□□□ -2.35
VPS53Q5VIR6 RNU7-24P-201ENST00000458867 62 ntBASIC0.4□□□□□ -2.35
VPS53Q5VIR6 MIR4666B-201ENST00000578142 81 ntBASIC0.4□□□□□ -2.35
VPS53Q5VIR6 RNU6-1327P-201ENST00000365302 105 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 RNA5SP128-201ENST00000365305 116 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 RNU6-54P-201ENST00000365563 107 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.437-201ENST00000384113 113 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 RNU5B-6P-201ENST00000516765 68 ntBASIC0.39□□□□□ -2.35
VPS53Q5VIR6 RNU6-495P-201ENST00000362995 107 ntBASIC0.38□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.316-201ENST00000365118 111 ntBASIC0.38□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.407-201ENST00000383986 113 ntBASIC0.38□□□□□ -2.35
VPS53Q5VIR6 SNORD75.2-201ENST00000408784 58 ntBASIC0.38□□□□□ -2.35
VPS53Q5VIR6 U6.81-201ENST00000612550 106 ntBASIC0.38□□□□□ -2.35
VPS53Q5VIR6 RNU6-161P-201ENST00000363051 106 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 MIR501-201ENST00000390204 84 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.606-201ENST00000410579 103 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 RNU6-1232P-201ENST00000516299 86 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 RNU6-1108P-201ENST00000516308 104 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 SNORA72.7-201ENST00000516349 94 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 MIR548AD-201ENST00000584780 82 ntBASIC0.37□□□□□ -2.35
VPS53Q5VIR6 SNORA9.1-201ENST00000362412 131 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 RNU6-315P-201ENST00000362666 107 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 RNA5SP62-201ENST00000363457 110 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 RNU6-824P-201ENST00000363724 104 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.258-201ENST00000364613 105 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 RNU6-686P-201ENST00000364839 107 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 RNA5SP173-201ENST00000364857 136 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 MIR4473-201ENST00000583731 91 ntBASIC0.36□□□□□ -2.35
VPS53Q5VIR6 MIRLET7A1-201ENST00000362295 80 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 RNU6-478P-201ENST00000363904 110 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 SNORD114-4-201ENST00000363962 75 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 YWHAEP3-201ENST00000582767 121 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 MIR4677-201ENST00000584153 80 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 uc_338.10-201ENST00000621872 182 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 MIR3202-2-201ENST00000635980 79 ntBASIC0.35□□□□□ -2.35
VPS53Q5VIR6 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
VPS53Q5VIR6 Y_RNA.219-201ENST00000364232 113 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 MIR193B-201ENST00000384907 83 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 AC073261.1-201ENST00000429409 121 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 RNA5SP480-201ENST00000516840 109 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 MIR1245B-201ENST00000636115 69 ntBASIC0.34□□□□□ -2.36
VPS53Q5VIR6 Y_RNA.12-201ENST00000362393 112 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 RNU6-340P-201ENST00000364005 107 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 RNU6-681P-201ENST00000364012 104 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 RNU6-382P-201ENST00000365181 106 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 RNU6-815P-201ENST00000384080 113 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 MIR548AE1-201ENST00000583292 70 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 AC010487.4-201ENST00000637027 61 ntBASIC0.33□□□□□ -2.36
VPS53Q5VIR6 RNU6-652P-201ENST00000365488 107 ntBASIC0.32□□□□□ -2.36
VPS53Q5VIR6 RNU6-787P-201ENST00000384032 107 ntBASIC0.32□□□□□ -2.36
VPS53Q5VIR6 RNU6-380P-201ENST00000410207 107 ntBASIC0.32□□□□□ -2.36
VPS53Q5VIR6 SNORD42B-201ENST00000458893 67 ntBASIC0.32□□□□□ -2.36
VPS53Q5VIR6 RNU7-129P-201ENST00000516128 62 ntBASIC0.32□□□□□ -2.36
VPS53Q5VIR6 RNU6-573P-201ENST00000383938 106 ntBASIC0.31□□□□□ -2.36
VPS53Q5VIR6 MIR4773-1-201ENST00000637203 78 ntBASIC0.31□□□□□ -2.36
VPS53Q5VIR6 Y_RNA.371-201ENST00000365591 113 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 MIR652-201ENST00000385278 98 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 RNU6-274P-201ENST00000459566 107 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 SCARNA17.3-201ENST00000516381 125 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 RNU6-303P-201ENST00000517091 106 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 MIR4712-201ENST00000583750 82 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 MIR499B-201ENST00000636498 73 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 MIR4315-1-201ENST00000636800 73 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 MIR4315-2-201ENST00000640925 73 ntBASIC0.3□□□□□ -2.36
VPS53Q5VIR6 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.3□□□□□ -2.36
VPS53Q5VIR6 RNU6-154P-201ENST00000384306 106 ntBASIC0.29□□□□□ -2.36
VPS53Q5VIR6 Y_RNA.540-201ENST00000384638 111 ntBASIC0.29□□□□□ -2.36
VPS53Q5VIR6 RNU6-127P-201ENST00000390897 107 ntBASIC0.29□□□□□ -2.36
VPS53Q5VIR6 RNU6-752P-201ENST00000516376 102 ntBASIC0.29□□□□□ -2.36
VPS53Q5VIR6 RNU6-782P-201ENST00000516852 104 ntBASIC0.29□□□□□ -2.36
VPS53Q5VIR6 Y_RNA.313-201ENST00000365095 103 ntBASIC0.28□□□□□ -2.36
VPS53Q5VIR6 MIR516B1-201ENST00000385211 90 ntBASIC0.28□□□□□ -2.36
VPS53Q5VIR6 MIR4514-201ENST00000581410 57 ntBASIC0.28□□□□□ -2.36
VPS53Q5VIR6 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
VPS53Q5VIR6 MIR1297-201ENST00000637311 77 ntBASIC0.28□□□□□ -2.36
VPS53Q5VIR6 SNORD114-29-201ENST00000364819 70 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 MIR876-201ENST00000401147 81 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 MIR1273G-201ENST00000577677 100 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 AC084368.1-201ENST00000620935 65 ntBASIC0.27□□□□□ -2.37
VPS53Q5VIR6 RNU6-1094P-201ENST00000362416 104 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 Y_RNA.94-201ENST00000363068 106 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 RNU6-1039P-201ENST00000383931 107 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 RNU6-1124P-201ENST00000384169 107 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 SNORD78.1-201ENST00000390866 65 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 SNORA75.1-201ENST00000391130 148 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 AC074348.1-201ENST00000426503 132 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 AC244090.1-201ENST00000441884 93 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.26□□□□□ -2.37
VPS53Q5VIR6 MIR3925-201ENST00000584674 77 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.26□□□□□ -2.37
VPS53Q5VIR6 MIR20A-201ENST00000362279 71 ntBASIC0.25□□□□□ -2.37
VPS53Q5VIR6 RNU6-228P-201ENST00000362700 106 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms