Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-388P-201ENST00000517012 105 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 RNU6-389P-201ENST00000517048 105 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 MIR3613-201ENST00000579844 87 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 MIR3064-201ENST00000581130 66 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.9□□□□□ -2.55
FOXA1P55317 SNORD114-25-201ENST00000363742 72 ntBASIC-0.91□□□□□ -2.56
FOXA1P55317 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.91□□□□□ -2.56
FOXA1P55317 SNORD115-23-201ENST00000364461 82 ntBASIC-0.91□□□□□ -2.56
FOXA1P55317 SCARNA17-201ENST00000516183 144 ntBASIC-0.91□□□□□ -2.56
FOXA1P55317 MIR4679-2-201ENST00000578358 77 ntBASIC-0.91□□□□□ -2.56
FOXA1P55317 RNU6-990P-201ENST00000364385 104 ntBASIC-0.92□□□□□ -2.56
FOXA1P55317 SNORA24B-201ENST00000384176 131 ntBASIC-0.92□□□□□ -2.56
FOXA1P55317 AC068339.1-201ENST00000526965 141 ntBASIC-0.92□□□□□ -2.56
FOXA1P55317 MIR4439-201ENST00000583746 80 ntBASIC-0.92□□□□□ -2.56
FOXA1P55317 AC104996.3-201ENST00000590718 94 ntBASIC-0.92□□□□□ -2.56
FOXA1P55317 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 RNU6-644P-201ENST00000391155 98 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 AL500527.2-201ENST00000454105 95 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 RNU6-772P-201ENST00000516042 105 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 RNU6-426P-201ENST00000516464 97 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 AC103810.7-201ENST00000607821 91 ntBASIC-0.93□□□□□ -2.56
FOXA1P55317 SNORD45B-201ENST00000364617 72 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 RNU6-813P-201ENST00000384691 107 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 MIR1468-201ENST00000410600 86 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 SNORD4B-201ENST00000459083 72 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 AC021146.9-201ENST00000512503 156 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 MIR198-201ENST00000637333 62 ntBASIC-0.94□□□□□ -2.56
FOXA1P55317 AL157777.2-201ENST00000258070 137 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 SNORD75.2-201ENST00000408784 58 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 MTND4LP9-201ENST00000427694 174 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 RNU7-24P-201ENST00000458867 62 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 SNORD18.2-201ENST00000459604 70 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 MTND5P41-201ENST00000517498 206 ntBASIC-0.95□□□□□ -2.56
FOXA1P55317 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.96□□□□□ -2.56
FOXA1P55317 MIR6738-201ENST00000619620 64 ntBASIC-0.96□□□□□ -2.56
FOXA1P55317 U6.96-201ENST00000636425 70 ntBASIC-0.96□□□□□ -2.56
FOXA1P55317 SNORA62.4-201ENST00000365504 151 ntBASIC-0.97□□□□□ -2.56
FOXA1P55317 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.97□□□□□ -2.56
FOXA1P55317 MIR124-2-201ENST00000385081 109 ntBASIC-0.97□□□□□ -2.56
FOXA1P55317 YWHAEP3-201ENST00000582767 121 ntBASIC-0.97□□□□□ -2.56
FOXA1P55317 MIR548Z-201ENST00000584743 97 ntBASIC-0.97□□□□□ -2.56
FOXA1P55317 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.97□□□□□ -2.56
FOXA1P55317 MIR548A1-201ENST00000385041 97 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 MT-TG-201ENST00000387429 68 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 RNA5SP292-201ENST00000390974 118 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 RNU6-519P-201ENST00000410590 108 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 RNU6-62P-201ENST00000516526 102 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 MIR5009-201ENST00000578736 100 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 MIR4499-201ENST00000584834 69 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 uc_338.19-201ENST00000616808 99 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 MIR4320-201ENST00000636981 65 ntBASIC-0.98□□□□□ -2.57
FOXA1P55317 RNU6-208P-201ENST00000362431 107 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 RNU4-32P-201ENST00000363404 141 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 RNU6-10P-201ENST00000384036 107 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 SNORD64-201ENST00000386683 67 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 SNORD90-201ENST00000391145 111 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 AL353621.2-201ENST00000605340 133 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 AC090617.8-201ENST00000623339 167 ntBASIC-0.99□□□□□ -2.57
FOXA1P55317 Y_RNA.257-201ENST00000364596 102 ntBASIC-1□□□□□ -2.57
FOXA1P55317 RNU6-431P-201ENST00000383874 107 ntBASIC-1□□□□□ -2.57
FOXA1P55317 SNORA18.5-201ENST00000516616 101 ntBASIC-1□□□□□ -2.57
FOXA1P55317 RNU6-382P-201ENST00000365181 106 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 MIR147A-201ENST00000385079 72 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 SNORA40-201ENST00000388090 126 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 MTATP6P29-201ENST00000415057 132 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 RNU7-107P-201ENST00000459121 61 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 RNU6-274P-201ENST00000459566 107 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 RNU6-182P-201ENST00000516970 105 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 MIR4777-201ENST00000583710 86 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 MIR4324-201ENST00000584846 72 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 AC006254.2-201ENST00000603259 279 ntBASIC-1.01□□□□□ -2.57
FOXA1P55317 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 SNORD114-17-201ENST00000364699 75 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 RNU6-257P-201ENST00000410238 98 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 RNU6-795P-201ENST00000516323 103 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 RNA5SP470-201ENST00000516463 106 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 MIR4464-201ENST00000580818 92 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 AL353803.5-201ENST00000599815 141 ntBASIC-1.02□□□□□ -2.57
FOXA1P55317 RNU6-260P-201ENST00000384092 107 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 RNU6-886P-201ENST00000384319 105 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 MIR601-201ENST00000385256 79 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.03□□□□□ -2.57
FOXA1P55317 MIR548I1-201ENST00000408810 149 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 snoU13.17-201ENST00000458802 104 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 RNA5SP147-201ENST00000516493 109 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 AC140658.3-201ENST00000567603 271 ntBASIC-1.03□□□□□ -2.57
FOXA1P55317 MIR378F-201ENST00000578143 78 ntBASIC-1.03□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms