Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.67□□□□□ -2.52
SDC1P18827 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.67□□□□□ -2.52
SDC1P18827 RNU6-412P-201ENST00000516434 106 ntBASIC-0.67□□□□□ -2.52
SDC1P18827 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 SCARNA23-201ENST00000516060 130 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 RNU6-904P-201ENST00000516206 101 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 RNA5SP169-201ENST00000517268 117 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 MIR3668-201ENST00000582138 75 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 MIR4280-201ENST00000582178 76 ntBASIC-0.68□□□□□ -2.52
SDC1P18827 RNU6-502P-201ENST00000362419 108 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 RNU6-495P-201ENST00000362995 107 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 SNORD75.1-201ENST00000408373 60 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 RNA5SP451-201ENST00000410588 110 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.69□□□□□ -2.52
SDC1P18827 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.7□□□□□ -2.52
SDC1P18827 RNU6-476P-201ENST00000384726 107 ntBASIC-0.7□□□□□ -2.52
SDC1P18827 SNORD90-201ENST00000391145 111 ntBASIC-0.7□□□□□ -2.52
SDC1P18827 RNU6-746P-201ENST00000384112 109 ntBASIC-0.71□□□□□ -2.52
SDC1P18827 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.71□□□□□ -2.52
SDC1P18827 RNU6-62P-201ENST00000516526 102 ntBASIC-0.71□□□□□ -2.52
SDC1P18827 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 RNU6-973P-201ENST00000364690 107 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 SNORA63.6-201ENST00000364921 119 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 SNORD58A-201ENST00000383875 65 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 RNU6-972P-201ENST00000391208 107 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 SNORA18.5-201ENST00000516616 101 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 MIR6851-201ENST00000617060 67 ntBASIC-0.72□□□□□ -2.52
SDC1P18827 RNU6-887P-201ENST00000410660 100 ntBASIC-0.73□□□□□ -2.53
SDC1P18827 SNORD38.3-201ENST00000516599 73 ntBASIC-0.73□□□□□ -2.53
SDC1P18827 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 RNU6-990P-201ENST00000364385 104 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 RNU6-959P-201ENST00000384671 107 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 MIR604-201ENST00000384880 94 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 SNORA3B-201ENST00000391305 131 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 SNORD75.2-201ENST00000408784 58 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.74□□□□□ -2.53
SDC1P18827 RNU7-24P-201ENST00000458867 62 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.74□□□□□ -2.53
SDC1P18827 SNORD114-14-201ENST00000362723 75 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 RNU4-32P-201ENST00000363404 141 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 RNY4P3-201ENST00000365254 95 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 RNU6-35P-201ENST00000384530 107 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 MIR204-201ENST00000385200 110 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.75□□□□□ -2.53
SDC1P18827 RNU6-537P-201ENST00000517277 103 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 MIR6773-201ENST00000612812 74 ntBASIC-0.75□□□□□ -2.53
SDC1P18827 MIR590-201ENST00000385008 97 ntBASIC-0.76□□□□□ -2.53
SDC1P18827 MTATP6P29-201ENST00000415057 132 ntBASIC-0.76□□□□□ -2.53
SDC1P18827 MIR5704-201ENST00000584029 77 ntBASIC-0.76□□□□□ -2.53
SDC1P18827 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.77□□□□□ -2.53
SDC1P18827 MT-TR-201ENST00000387439 65 ntBASIC-0.77□□□□□ -2.53
SDC1P18827 AC026421.1-201ENST00000519101 163 ntBASIC-0.77□□□□□ -2.53
SDC1P18827 SNORD116-10-201ENST00000363791 102 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 MIR1302-5-201ENST00000408164 150 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 AC008267.6-201ENST00000441664 139 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 RNU7-61P-201ENST00000515897 61 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 RNU6-758P-201ENST00000516292 89 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 MIR4436A-201ENST00000585278 85 ntBASIC-0.78□□□□□ -2.53
SDC1P18827 RNU6-382P-201ENST00000365181 106 ntBASIC-0.79□□□□□ -2.54
SDC1P18827 MIRLET7B-201ENST00000385140 83 ntBASIC-0.79□□□□□ -2.54
SDC1P18827 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.79□□□□□ -2.54
SDC1P18827 RNU6-337P-201ENST00000391243 106 ntBASIC-0.79□□□□□ -2.54
SDC1P18827 AC021146.9-201ENST00000512503 156 ntBASIC-0.79□□□□□ -2.54
SDC1P18827 AL365222.1-201ENST00000614661 98 ntBASIC-0.79□□□□□ -2.54
SDC1P18827 MIR224-201ENST00000384889 81 ntBASIC-0.8□□□□□ -2.54
SDC1P18827 MIR1265-201ENST00000408444 86 ntBASIC-0.8□□□□□ -2.54
SDC1P18827 RNU6-554P-201ENST00000410466 106 ntBASIC-0.8□□□□□ -2.54
SDC1P18827 RNU5F-1-201ENST00000362507 117 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 RNU6-81P-201ENST00000365608 104 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 RNU6-592P-201ENST00000411333 103 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 AC021146.6-201ENST00000514659 117 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 AC006254.2-201ENST00000603259 279 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 AC108676.2-201ENST00000605225 163 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 snoR1.1-201ENST00000628177 80 ntBASIC-0.81□□□□□ -2.54
SDC1P18827 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 RNU6-824P-201ENST00000363724 104 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 RNA5SP368-201ENST00000364298 116 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 SNORD115-23-201ENST00000364461 82 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 RNU6-106P-201ENST00000384405 107 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 SNORA13-201ENST00000458790 133 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 MIR6854-201ENST00000614935 69 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 MIR8068-201ENST00000618032 68 ntBASIC-0.82□□□□□ -2.54
SDC1P18827 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 SNORA19-201ENST00000384737 128 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 Z95118.1-201ENST00000421372 247 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 snoU13.17-201ENST00000458802 104 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 RNU6-109P-201ENST00000516364 107 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 RNU6-184P-201ENST00000516514 107 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 MIR6129-201ENST00000616087 109 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.83□□□□□ -2.54
SDC1P18827 MIR4773-1-201ENST00000637203 78 ntBASIC-0.83□□□□□ -2.54
SDC1P18827 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.84□□□□□ -2.54
SDC1P18827 MIR518B-201ENST00000385127 83 ntBASIC-0.84□□□□□ -2.54
SDC1P18827 MT-TQ-201ENST00000387372 72 ntBASIC-0.84□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 434.5 ms