Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR4773-1-201ENST00000637203 78 ntBASIC0.94□□□□□ -2.26
COL6A1P12109 MIR924-201ENST00000638017 53 ntBASIC0.94□□□□□ -2.26
COL6A1P12109 SNORD114-23-201ENST00000363536 72 ntBASIC0.93□□□□□ -2.26
COL6A1P12109 RNU6-154P-201ENST00000384306 106 ntBASIC0.93□□□□□ -2.26
COL6A1P12109 RNA5SP193-201ENST00000410353 107 ntBASIC0.93□□□□□ -2.26
COL6A1P12109 RNA5SP222-201ENST00000411039 105 ntBASIC0.93□□□□□ -2.26
COL6A1P12109 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A1P12109 RNU6-871P-201ENST00000516122 100 ntBASIC0.92□□□□□ -2.26
COL6A1P12109 RNU6-752P-201ENST00000516376 102 ntBASIC0.92□□□□□ -2.26
COL6A1P12109 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.92□□□□□ -2.26
COL6A1P12109 MIR6828-201ENST00000636181 60 ntBASIC0.92□□□□□ -2.26
COL6A1P12109 RNU6-382P-201ENST00000365181 106 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 SNORA8.2-201ENST00000384372 139 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 RNU6-110P-201ENST00000384508 104 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
COL6A1P12109 SNORD75.2-201ENST00000408784 58 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 RNA5SP121-201ENST00000516537 101 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 MIR4460-201ENST00000577862 86 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 MIR3675-201ENST00000583661 73 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
COL6A1P12109 AL109933.3-201ENST00000619095 188 ntBASIC0.91□□□□□ -2.26
COL6A1P12109 Y_RNA.433-201ENST00000384089 102 ntBASIC0.9□□□□□ -2.27
COL6A1P12109 RNU7-24P-201ENST00000458867 62 ntBASIC0.9□□□□□ -2.27
COL6A1P12109 RNA5SP268-201ENST00000516828 124 ntBASIC0.9□□□□□ -2.27
COL6A1P12109 RNA5SP94-201ENST00000516917 108 ntBASIC0.9□□□□□ -2.27
COL6A1P12109 RNU6-269P-201ENST00000391077 97 ntBASIC0.89□□□□□ -2.27
COL6A1P12109 RNU6-587P-201ENST00000391282 106 ntBASIC0.89□□□□□ -2.27
COL6A1P12109 AC093423.1-201ENST00000440817 142 ntBASIC0.89□□□□□ -2.27
COL6A1P12109 MIR4711-201ENST00000578274 70 ntBASIC0.89□□□□□ -2.27
COL6A1P12109 RNU6-495P-201ENST00000362995 107 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 RNU1-141P-201ENST00000364623 158 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 RNU6V-201ENST00000384105 107 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 MT-TY-201ENST00000387409 66 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 AL691482.2-201ENST00000457453 84 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 AC073869.9-201ENST00000641610 120 ntBASIC0.88□□□□□ -2.27
COL6A1P12109 RNU6-330P-201ENST00000363015 107 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 SNORA36.1-201ENST00000363424 132 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 SNORA36.2-201ENST00000384004 127 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 MIR146A-201ENST00000385201 99 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 MIR154-201ENST00000385243 84 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 MIR6835-201ENST00000621552 64 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 AL162376.1-201ENST00000624117 175 ntBASIC0.87□□□□□ -2.27
COL6A1P12109 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL6A1P12109 RNA5SP257-201ENST00000363023 116 ntBASIC0.86□□□□□ -2.27
COL6A1P12109 RNU6-54P-201ENST00000365563 107 ntBASIC0.86□□□□□ -2.27
COL6A1P12109 RNU6-523P-201ENST00000516304 54 ntBASIC0.86□□□□□ -2.27
COL6A1P12109 RNU6-1015P-201ENST00000517121 99 ntBASIC0.86□□□□□ -2.27
COL6A1P12109 MIR664A-201ENST00000626086 82 ntBASIC0.86□□□□□ -2.27
COL6A1P12109 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
COL6A1P12109 MIR330-201ENST00000362196 94 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 SNORD114-2-201ENST00000363953 78 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 RNU6-1241P-201ENST00000384536 107 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 MIR508-201ENST00000384857 115 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 RNA5SP484-201ENST00000458857 111 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 RNU6-687P-201ENST00000516443 89 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 MIR8087-201ENST00000612745 78 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 AC069503.3-201ENST00000618674 145 ntBASIC0.85□□□□□ -2.27
COL6A1P12109 MIR140-201ENST00000385282 100 ntBASIC0.84□□□□□ -2.27
COL6A1P12109 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
COL6A1P12109 NAMPTP3-201ENST00000569273 224 ntBASIC0.84□□□□□ -2.27
COL6A1P12109 SNORD114-4-201ENST00000363962 75 ntBASIC0.83□□□□□ -2.28
COL6A1P12109 RNU6-634P-201ENST00000459134 106 ntBASIC0.83□□□□□ -2.28
COL6A1P12109 MIR7107-201ENST00000611489 80 ntBASIC0.83□□□□□ -2.28
COL6A1P12109 MIR8053-201ENST00000613344 75 ntBASIC0.83□□□□□ -2.28
COL6A1P12109 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
COL6A1P12109 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
COL6A1P12109 RNU6-1039P-201ENST00000383931 107 ntBASIC0.82□□□□□ -2.28
COL6A1P12109 MIR6509-201ENST00000614603 85 ntBASIC0.82□□□□□ -2.28
COL6A1P12109 MIR6866-201ENST00000638146 69 ntBASIC0.82□□□□□ -2.28
COL6A1P12109 SNORD45.1-201ENST00000363181 77 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 AC006210.1-201ENST00000424882 111 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 AC114801.3-201ENST00000510231 177 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 RNA5SP476-201ENST00000516613 103 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 AC092634.7-201ENST00000621022 103 ntBASIC0.81□□□□□ -2.28
COL6A1P12109 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
COL6A1P12109 RNA5SP347-201ENST00000362445 119 ntBASIC0.79□□□□□ -2.28
COL6A1P12109 SNORD110-201ENST00000408189 75 ntBASIC0.79□□□□□ -2.28
COL6A1P12109 RNU5B-6P-201ENST00000516765 68 ntBASIC0.79□□□□□ -2.28
COL6A1P12109 RNA5SP62-201ENST00000363457 110 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 RNA5SP517-201ENST00000364724 117 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 RNY1P8-201ENST00000383970 114 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 RNU6-895P-201ENST00000384125 103 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 SNORD71-201ENST00000411292 86 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 SNORD42B-201ENST00000458893 67 ntBASIC0.78□□□□□ -2.28
COL6A1P12109 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
COL6A1P12109 RNU6-604P-201ENST00000390917 100 ntBASIC0.77□□□□□ -2.29
COL6A1P12109 SNORA40.8-201ENST00000411034 126 ntBASIC0.77□□□□□ -2.29
COL6A1P12109 Y_RNA.407-201ENST00000383986 113 ntBASIC0.76□□□□□ -2.29
COL6A1P12109 AC139453.2-201ENST00000487255 133 ntBASIC0.76□□□□□ -2.29
COL6A1P12109 RNA5SP499-201ENST00000363982 119 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 RNU6-260P-201ENST00000384092 107 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 RNU6-649P-201ENST00000384463 107 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 MIR203A-201ENST00000384836 110 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 SNORD30.1-201ENST00000391309 70 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 MIR1197-201ENST00000408818 88 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 RNU6-539P-201ENST00000516665 103 ntBASIC0.75□□□□□ -2.29
COL6A1P12109 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms