Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORA32.1-201ENST00000364514 115 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 SNORD49B-201ENST00000365172 72 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 RNY4P18-201ENST00000391107 89 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 SNORD90-201ENST00000391145 111 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 SNORD4A-201ENST00000459174 72 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 RNU6-162P-201ENST00000516228 103 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 U7.3-201ENST00000616123 62 ntBASIC-0.24□□□□□ -2.45
HOXC11O43248 MIR655-201ENST00000362159 97 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 RNU4-32P-201ENST00000363404 141 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 SNORA24B-201ENST00000384176 131 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 RNU6-406P-201ENST00000516470 107 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 SNORA18.5-201ENST00000516616 101 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 RNU6-789P-201ENST00000517105 102 ntBASIC-0.25□□□□□ -2.45
HOXC11O43248 MIR450A1-201ENST00000362262 91 ntBASIC-0.26□□□□□ -2.45
HOXC11O43248 MIR582-201ENST00000365731 98 ntBASIC-0.26□□□□□ -2.45
HOXC11O43248 RNU4-61P-201ENST00000411243 107 ntBASIC-0.26□□□□□ -2.45
HOXC11O43248 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.26□□□□□ -2.45
HOXC11O43248 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.27□□□□□ -2.45
HOXC11O43248 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.27□□□□□ -2.45
HOXC11O43248 SNORA49-201ENST00000386157 136 ntBASIC-0.27□□□□□ -2.45
HOXC11O43248 AL031737.1-201ENST00000450125 223 ntBASIC-0.27□□□□□ -2.45
HOXC11O43248 SNORD114-4-201ENST00000363962 75 ntBASIC-0.28□□□□□ -2.45
HOXC11O43248 MIR548E-201ENST00000408287 88 ntBASIC-0.28□□□□□ -2.45
HOXC11O43248 MTATP8P2-201ENST00000435212 202 ntBASIC-0.28□□□□□ -2.45
HOXC11O43248 RNU6-158P-201ENST00000517104 100 ntBASIC-0.28□□□□□ -2.45
HOXC11O43248 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.29□□□□□ -2.46
HOXC11O43248 RNU6-495P-201ENST00000362995 107 ntBASIC-0.29□□□□□ -2.46
HOXC11O43248 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.29□□□□□ -2.46
HOXC11O43248 RNA5SP395-201ENST00000516567 118 ntBASIC-0.29□□□□□ -2.46
HOXC11O43248 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
HOXC11O43248 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 RNY4P3-201ENST00000365254 95 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 MTATP6P29-201ENST00000415057 132 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 AC097510.1-201ENST00000510945 133 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 AC145423.2-201ENST00000610631 239 ntBASIC-0.3□□□□□ -2.46
HOXC11O43248 RNU6-302P-201ENST00000365249 107 ntBASIC-0.31□□□□□ -2.46
HOXC11O43248 RNU6-455P-201ENST00000384681 107 ntBASIC-0.31□□□□□ -2.46
HOXC11O43248 MIR214-201ENST00000385214 110 ntBASIC-0.31□□□□□ -2.46
HOXC11O43248 IGLVI-20-201ENST00000519296 130 ntBASIC-0.31□□□□□ -2.46
HOXC11O43248 AP000676.1-201ENST00000533307 52 ntBASIC-0.31□□□□□ -2.46
HOXC11O43248 RNU6-755P-201ENST00000364400 103 ntBASIC-0.32□□□□□ -2.46
HOXC11O43248 RNA5SP300-201ENST00000391197 107 ntBASIC-0.32□□□□□ -2.46
HOXC11O43248 MIR4796-201ENST00000580742 81 ntBASIC-0.32□□□□□ -2.46
HOXC11O43248 SNORD115-25-201ENST00000362619 82 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 SNORA63.4-201ENST00000362763 126 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 RNU6-215P-201ENST00000365169 102 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 SNORD20-201ENST00000384550 80 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 MIR9-2-201ENST00000384838 87 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 SNORD75.2-201ENST00000408784 58 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 RNU7-24P-201ENST00000458867 62 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 MIR4263-201ENST00000584745 83 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 AL590491.3-201ENST00000610731 82 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 AP001318.4-201ENST00000616637 121 ntBASIC-0.33□□□□□ -2.46
HOXC11O43248 RNU5F-1-201ENST00000362507 117 ntBASIC-0.34□□□□□ -2.46
HOXC11O43248 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.34□□□□□ -2.46
HOXC11O43248 MIR1236-201ENST00000408340 102 ntBASIC-0.34□□□□□ -2.46
HOXC11O43248 snoU13.17-201ENST00000458802 104 ntBASIC-0.34□□□□□ -2.46
HOXC11O43248 MIR2052-201ENST00000636055 55 ntBASIC-0.34□□□□□ -2.46
HOXC11O43248 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.35□□□□□ -2.47
HOXC11O43248 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 RNU6-990P-201ENST00000364385 104 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 SNORD115-27-201ENST00000364430 82 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 RNU6-35P-201ENST00000384530 107 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 SNORD2-201ENST00000459163 69 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 RNU7-153P-201ENST00000516455 62 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 MIR4788-201ENST00000639104 80 ntBASIC-0.35□□□□□ -2.47
HOXC11O43248 RNU6-824P-201ENST00000363724 104 ntBASIC-0.36□□□□□ -2.47
HOXC11O43248 RNU6-382P-201ENST00000365181 106 ntBASIC-0.36□□□□□ -2.47
HOXC11O43248 RNU6-919P-201ENST00000516731 104 ntBASIC-0.36□□□□□ -2.47
HOXC11O43248 RNU6-900P-201ENST00000384498 102 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 SNORA40.13-201ENST00000516379 120 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 MIR5589-201ENST00000579442 60 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 MIR4802-201ENST00000581881 80 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 MIR4636-201ENST00000582271 80 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 U2.22-201ENST00000636441 106 ntBASIC-0.37□□□□□ -2.47
HOXC11O43248 SNORA63.6-201ENST00000364921 119 ntBASIC-0.38□□□□□ -2.47
HOXC11O43248 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.38□□□□□ -2.47
HOXC11O43248 RNU6-147P-201ENST00000383983 107 ntBASIC-0.38□□□□□ -2.47
HOXC11O43248 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.38□□□□□ -2.47
HOXC11O43248 AC006254.2-201ENST00000603259 279 ntBASIC-0.38□□□□□ -2.47
HOXC11O43248 MIR4773-1-201ENST00000637203 78 ntBASIC-0.38□□□□□ -2.47
HOXC11O43248 RNU6-502P-201ENST00000362419 108 ntBASIC-0.39□□□□□ -2.47
HOXC11O43248 SNORD114-31-201ENST00000363219 75 ntBASIC-0.39□□□□□ -2.47
HOXC11O43248 SNORD114-11-201ENST00000363738 75 ntBASIC-0.39□□□□□ -2.47
HOXC11O43248 RNU7-55P-201ENST00000459426 62 ntBASIC-0.39□□□□□ -2.47
HOXC11O43248 MALAT1.1-201ENST00000618249 95 ntBASIC-0.39□□□□□ -2.47
HOXC11O43248 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 RNU6-32P-201ENST00000383948 107 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 RNU6-13P-201ENST00000384248 107 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 RNU6-12P-201ENST00000384604 107 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 SNORD56B-201ENST00000384713 71 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 RNU6-41P-201ENST00000384741 107 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 MIR519C-201ENST00000385053 87 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 AL035461.1-201ENST00000421490 332 ntBASIC-0.4□□□□□ -2.47
HOXC11O43248 snoU13.13-201ENST00000458842 104 ntBASIC-0.4□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms