Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RNA5SP331-201ENST00000364986 107 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR934-201ENST00000401241 83 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-135P-201ENST00000516769 101 ntBASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6V-201ENST00000384105 107 ntBASIC1.8□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-808P-201ENST00000391233 108 ntBASIC1.8□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU1-78P-201ENST00000391248 165 ntBASIC1.79□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR4422-201ENST00000581938 83 ntBASIC1.79□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-910P-201ENST00000390844 107 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-122P-201ENST00000516818 107 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-92P-201ENST00000605893 104 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR6739-201ENST00000622461 75 ntBASIC1.78□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD42B-201ENST00000458893 67 ntBASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-1089P-201ENST00000516473 104 ntBASIC1.77□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 Y_RNA.250-201ENST00000364542 110 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR1827-201ENST00000408549 66 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD79.1-201ENST00000516069 84 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-656P-201ENST00000516785 107 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR3938-201ENST00000582157 103 ntBASIC1.76□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.75□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AL136317.1-201ENST00000612653 226 ntBASIC1.75□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-446P-201ENST00000362827 106 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD114-4-201ENST00000363962 75 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNA5SP117-201ENST00000365294 118 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MT-TY-201ENST00000387409 66 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNA5SP147-201ENST00000516493 109 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR4639-201ENST00000584938 69 ntBASIC1.74□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-1162P-201ENST00000384443 104 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD41.1-201ENST00000391000 69 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-469P-201ENST00000516253 101 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC018659.1-201ENST00000551083 169 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR4460-201ENST00000577862 86 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR7978-201ENST00000636158 59 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC010487.4-201ENST00000637027 61 ntBASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 SNORD114-23-201ENST00000363536 72 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR548L-201ENST00000408303 86 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 AC008834.1-201ENST00000511612 175 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 MIR7974-201ENST00000615835 79 ntBASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
SENP3-EIF4A1A0A087X0R7 RNU6-990P-201ENST00000364385 104 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD12-201ENST00000391002 90 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AC002350.1-201ENST00000490759 375 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-902P-201ENST00000517212 91 ntBASIC1.71□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR548V-201ENST00000584165 80 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AC244669.1-204ENST00000621564 178 ntBASIC1.7□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-936P-201ENST00000384005 107 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD28-201ENST00000384706 75 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RPS29P23-201ENST00000458635 123 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORA70.22-201ENST00000517160 124 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORA40.17-201ENST00000517256 115 ntBASIC1.69□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD60.1-201ENST00000362451 73 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR644A-201ENST00000385262 94 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR1197-201ENST00000408818 88 ntBASIC1.68□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-1184P-201ENST00000384588 108 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR548C-201ENST00000384815 97 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 MIR521-2-201ENST00000384818 87 ntBASIC1.67□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU1-141P-201ENST00000364623 158 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 SNORD113-4-201ENST00000364802 75 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 AL157398.1-201ENST00000452981 186 ntBASIC1.66□□□□□ -2.14
SENP3-EIF4A1A0A087X0R7 RNU6-726P-201ENST00000364680 107 ntBASIC1.65□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORD113-2-201ENST00000391082 72 ntBASIC1.65□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA75.1-201ENST00000391130 148 ntBASIC1.64□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR330-201ENST00000362196 94 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR630-201ENST00000384957 97 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR758-201ENST00000390227 88 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 CYP3A137P-201ENST00000562436 69 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 AC211469.2-201ENST00000605461 205 ntBASIC1.63□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA15B-2-201ENST00000384058 135 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA15B-1-201ENST00000384334 135 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORA8.2-201ENST00000384372 139 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR517B-201ENST00000385102 67 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNA5SP285-201ENST00000516619 119 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 uc_338.10-201ENST00000621872 182 ntBASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.62□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-698P-201ENST00000363523 107 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-34P-201ENST00000364874 107 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 snoU13.19-201ENST00000459148 104 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-1110P-201ENST00000516462 101 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNA5SP47-201ENST00000517230 109 ntBASIC1.61□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SNORD18A-201ENST00000363753 72 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-520P-201ENST00000384717 104 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 MIR3660-201ENST00000584845 100 ntBASIC1.6□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 AC021146.9-201ENST00000512503 156 ntBASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU5B-6P-201ENST00000516765 68 ntBASIC1.59□□□□□ -2.15
SENP3-EIF4A1A0A087X0R7 RNU6-30P-201ENST00000384561 107 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORD105-201ENST00000386910 85 ntBASIC1.58□□□□□ -2.16
SENP3-EIF4A1A0A087X0R7 SNORD89-201ENST00000390981 114 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 350 ms