Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIR6514-201ENST00000622549 70 ntBASIC-0.16□□□□□ -2.44
LIME1Q9H400 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.16□□□□□ -2.44
LIME1Q9H400 MIR216B-201ENST00000390186 82 ntBASIC-0.17□□□□□ -2.44
LIME1Q9H400 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.17□□□□□ -2.44
LIME1Q9H400 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.17□□□□□ -2.44
LIME1Q9H400 MIR548AE1-201ENST00000583292 70 ntBASIC-0.17□□□□□ -2.44
LIME1Q9H400 RNU6-86P-201ENST00000606534 107 ntBASIC-0.17□□□□□ -2.44
LIME1Q9H400 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.17□□□□□ -2.44
LIME1Q9H400 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 RNU6-46P-201ENST00000383860 107 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 SNORD116-21-201ENST00000384507 92 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 AC008267.6-201ENST00000441664 139 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 RNU6-412P-201ENST00000516434 106 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 AL513043.2-201ENST00000573941 143 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 MIR4645-201ENST00000583158 77 ntBASIC-0.18□□□□□ -2.44
LIME1Q9H400 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.19□□□□□ -2.44
LIME1Q9H400 MIR548O2-201ENST00000616090 70 ntBASIC-0.19□□□□□ -2.44
LIME1Q9H400 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.19□□□□□ -2.44
LIME1Q9H400 RNU4-36P-201ENST00000364294 144 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 RNU6-813P-201ENST00000384691 107 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 MIR106A-201ENST00000384870 81 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 MIR548M-201ENST00000408260 86 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 RNU7-85P-201ENST00000458851 63 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 RNU7-188P-201ENST00000517063 64 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 RN7SL660P-201ENST00000614852 299 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 uc_338.10-201ENST00000621872 182 ntBASIC-0.2□□□□□ -2.44
LIME1Q9H400 SNORD114-28-201ENST00000363610 72 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 SNORD114-15-201ENST00000364687 72 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 RNU6-644P-201ENST00000391155 98 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 RNU6-904P-201ENST00000516206 101 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 MIR4777-201ENST00000583710 86 ntBASIC-0.21□□□□□ -2.44
LIME1Q9H400 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.22□□□□□ -2.44
LIME1Q9H400 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.22□□□□□ -2.44
LIME1Q9H400 SNORA18.1-201ENST00000363418 128 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 SNORD114-29-201ENST00000364819 70 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 RNU6-154P-201ENST00000384306 106 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 MIR451A-201ENST00000385059 72 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 RNU6-65P-201ENST00000516332 98 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 RNU6-175P-201ENST00000516896 107 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 AC103810.7-201ENST00000607821 91 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 AL365222.1-201ENST00000614661 98 ntBASIC-0.23□□□□□ -2.45
LIME1Q9H400 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.24□□□□□ -2.45
LIME1Q9H400 RNA5SP205-201ENST00000364653 136 ntBASIC-0.24□□□□□ -2.45
LIME1Q9H400 RNA5SP331-201ENST00000364986 107 ntBASIC-0.24□□□□□ -2.45
LIME1Q9H400 RNU6-476P-201ENST00000384726 107 ntBASIC-0.24□□□□□ -2.45
LIME1Q9H400 U3.27-201ENST00000391237 200 ntBASIC-0.24□□□□□ -2.45
LIME1Q9H400 SNORA19.1-201ENST00000410656 129 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 SNORD4A-201ENST00000459174 72 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 RNU6-537P-201ENST00000517277 103 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 MIR4536-1-201ENST00000583537 88 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 MIR548Z-201ENST00000584743 97 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 AC012531.4-201ENST00000616509 177 ntBASIC-0.25□□□□□ -2.45
LIME1Q9H400 MIR409-201ENST00000362237 79 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 RNU6-834P-201ENST00000362367 110 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 SCARNA23-201ENST00000516060 130 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 RNU6-795P-201ENST00000516323 103 ntBASIC-0.26□□□□□ -2.45
LIME1Q9H400 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 SNORD49B-201ENST00000365172 72 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 RNU6-132P-201ENST00000383863 107 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 AC244250.2-201ENST00000418731 148 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 MIR6507-201ENST00000613630 70 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.27□□□□□ -2.45
LIME1Q9H400 SNORD113-1-201ENST00000365321 69 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 RNU6-22P-201ENST00000384355 107 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 MIR652-201ENST00000385278 98 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.28□□□□□ -2.45
LIME1Q9H400 SNORD4B-201ENST00000459083 72 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 MIR3064-201ENST00000581130 66 ntBASIC-0.28□□□□□ -2.45
LIME1Q9H400 MIR655-201ENST00000362159 97 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 MIR20A-201ENST00000362279 71 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 RNU6-811P-201ENST00000384069 107 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 MIR548U-201ENST00000390728 81 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 RNA5SP451-201ENST00000410588 110 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 AC244090.1-201ENST00000441884 93 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 RNU6-589P-201ENST00000516485 107 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 MIR3666-201ENST00000607845 111 ntBASIC-0.29□□□□□ -2.46
LIME1Q9H400 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 RNU6-54P-201ENST00000365563 107 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 RNU6-972P-201ENST00000391208 107 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 RNU6-479P-201ENST00000516348 105 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 MIR3910-1-201ENST00000580936 111 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 AC104996.3-201ENST00000590718 94 ntBASIC-0.3□□□□□ -2.46
LIME1Q9H400 RNU6-106P-201ENST00000384405 107 ntBASIC-0.31□□□□□ -2.46
LIME1Q9H400 RNU6-554P-201ENST00000410466 106 ntBASIC-0.31□□□□□ -2.46
LIME1Q9H400 RNU6-887P-201ENST00000410660 100 ntBASIC-0.31□□□□□ -2.46
LIME1Q9H400 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms