Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.17□□□□□ -2.22
USP39Q53GS9 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
USP39Q53GS9 SNORD115-24-201ENST00000363528 82 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 Y_RNA.174-201ENST00000363781 105 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 RNU6-1126P-201ENST00000384002 107 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
USP39Q53GS9 RNU6-1177P-201ENST00000391058 104 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 MIR548J-201ENST00000408833 112 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 OR2A41P-201ENST00000473586 105 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 RNA5SP404-201ENST00000517118 132 ntBASIC1.16□□□□□ -2.22
USP39Q53GS9 RNU6-681P-201ENST00000364012 104 ntBASIC1.15□□□□□ -2.23
USP39Q53GS9 MIR3675-201ENST00000583661 73 ntBASIC1.15□□□□□ -2.23
USP39Q53GS9 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.15□□□□□ -2.23
USP39Q53GS9 MIR154-201ENST00000385243 84 ntBASIC1.14□□□□□ -2.23
USP39Q53GS9 AC002350.1-201ENST00000490759 375 ntBASIC1.14□□□□□ -2.23
USP39Q53GS9 RNU7-13P-201ENST00000516413 62 ntBASIC1.14□□□□□ -2.23
USP39Q53GS9 SNORD114-26-201ENST00000363543 72 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 RNU1-124P-201ENST00000363861 145 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 RNU6-382P-201ENST00000365181 106 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 SNORA25-201ENST00000384384 134 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 MIR598-201ENST00000384868 97 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 MIR1265-201ENST00000408444 86 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 AC067940.1-201ENST00000458411 300 ntBASIC1.13□□□□□ -2.23
USP39Q53GS9 RNU6-649P-201ENST00000384463 107 ntBASIC1.12□□□□□ -2.23
USP39Q53GS9 MIR644A-201ENST00000385262 94 ntBASIC1.12□□□□□ -2.23
USP39Q53GS9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
USP39Q53GS9 RNU6-1057P-201ENST00000517162 102 ntBASIC1.12□□□□□ -2.23
USP39Q53GS9 AL136317.1-201ENST00000612653 226 ntBASIC1.12□□□□□ -2.23
USP39Q53GS9 MIR6767-201ENST00000637302 66 ntBASIC1.12□□□□□ -2.23
USP39Q53GS9 MIR617-201ENST00000385030 97 ntBASIC1.11□□□□□ -2.23
USP39Q53GS9 MIR519E-201ENST00000385075 84 ntBASIC1.11□□□□□ -2.23
USP39Q53GS9 SNORD30.1-201ENST00000391309 70 ntBASIC1.11□□□□□ -2.23
USP39Q53GS9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.11□□□□□ -2.23
USP39Q53GS9 SNORD115-22-201ENST00000364456 82 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 MIR19B1-201ENST00000384829 87 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 RNU7-104P-201ENST00000459398 79 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 RNU6-1110P-201ENST00000516462 101 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 PVT1_3.1-201ENST00000620853 95 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 U6.111-201ENST00000636093 83 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 MIR4773-1-201ENST00000637203 78 ntBASIC1.1□□□□□ -2.23
USP39Q53GS9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USP39Q53GS9 RNU6-495P-201ENST00000362995 107 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 SNORD45A-201ENST00000384512 84 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 SNORD28-201ENST00000384706 75 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 SNORD89-201ENST00000390981 114 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 RNU6-663P-201ENST00000391105 106 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 MIR548O2-201ENST00000616090 70 ntBASIC1.09□□□□□ -2.23
USP39Q53GS9 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
USP39Q53GS9 SNORD45.1-201ENST00000363181 77 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 RNU6-800P-201ENST00000384473 103 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 SNORD75.2-201ENST00000408784 58 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 RNU7-24P-201ENST00000458867 62 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 RNU6-274P-201ENST00000459566 107 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 AC244669.1-204ENST00000621564 178 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 AC067863.3-201ENST00000624172 122 ntBASIC1.08□□□□□ -2.24
USP39Q53GS9 RNA5SP117-201ENST00000365294 118 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 Y_RNA.340-201ENST00000365330 92 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 SNORD105-201ENST00000386910 85 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 SNORD41.1-201ENST00000391000 69 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 AC093423.1-201ENST00000440817 142 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 U7.7-201ENST00000459276 60 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 RNU6-752P-201ENST00000516376 102 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 MIR4639-201ENST00000584938 69 ntBASIC1.07□□□□□ -2.24
USP39Q53GS9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
USP39Q53GS9 SNORD18A-201ENST00000363753 72 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 SNORD116-24-201ENST00000384549 92 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 AC244098.3-201ENST00000424803 96 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 SNORD124-201ENST00000459577 104 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 NAMPTP3-201ENST00000569273 224 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 AC211469.2-201ENST00000605461 205 ntBASIC1.06□□□□□ -2.24
USP39Q53GS9 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
USP39Q53GS9 RNU6-1335P-201ENST00000365426 107 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 RNU6-54P-201ENST00000365563 107 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 MIR216B-201ENST00000390186 82 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 RNU6-604P-201ENST00000390917 100 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 FABP5P4-201ENST00000437203 171 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 AC125388.1-201ENST00000459631 156 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 RNU6-881P-201ENST00000516813 102 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 RNA5SP47-201ENST00000517230 109 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 AC005520.4-201ENST00000604337 90 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 MIR8053-201ENST00000613344 75 ntBASIC1.05□□□□□ -2.24
USP39Q53GS9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USP39Q53GS9 SNORD113.1-201ENST00000363280 73 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 RNU6-726P-201ENST00000364680 107 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 SNORD42B-201ENST00000458893 67 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 RNU6-135P-201ENST00000516769 101 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 MIR6857-201ENST00000613267 93 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 MIR6779-201ENST00000617283 64 ntBASIC1.04□□□□□ -2.24
USP39Q53GS9 Y_RNA.205-201ENST00000364128 113 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 RNU6-1039P-201ENST00000383931 107 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 RNU6-471P-201ENST00000383944 106 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 MIR573-201ENST00000384964 99 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 AL691482.2-201ENST00000457453 84 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 MIR5000-201ENST00000577717 103 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 MIR3678-201ENST00000578455 94 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 MIR4661-201ENST00000582720 75 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 SNORD114-21-201ENST00000606412 72 ntBASIC1.03□□□□□ -2.24
USP39Q53GS9 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 191.2 ms