Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC109635.3-201ENST00000529536 185 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 RNU6-211P-201ENST00000384047 107 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 RNU6-696P-201ENST00000390834 107 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 SNORD116-25-201ENST00000516517 92 ntBASIC-1.38□□□□□ -2.63
CHD9Q3L8U1 RNU6-79P-201ENST00000362511 107 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 RNU6-681P-201ENST00000364012 104 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 MIR548A1-201ENST00000385041 97 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 Z83846.1-201ENST00000446798 265 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 RNU6-720P-201ENST00000516363 108 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 RNU7-6P-201ENST00000516845 62 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 AC073869.6-201ENST00000640656 341 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 RNU6-381P-201ENST00000391259 108 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 snoU13.17-201ENST00000458802 104 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 RNU6-168P-201ENST00000516189 101 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 MIR3657-201ENST00000584818 117 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 Z99129.1-201ENST00000612510 255 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 AL137067.1-201ENST00000615933 120 ntBASIC-1.39□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 SNORD38.1-201ENST00000363863 68 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6-382P-201ENST00000365181 106 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 SNORD18B-201ENST00000365659 72 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6-409P-201ENST00000384114 104 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 SNORD116-1-201ENST00000384335 95 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 SNORD116-29-201ENST00000384516 83 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6-240P-201ENST00000516098 97 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6-277P-201ENST00000516272 106 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.718-201ENST00000517110 102 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6-774P-201ENST00000363238 107 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.496-201ENST00000384444 101 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 MIR559-201ENST00000385188 96 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 MTND4P17-201ENST00000470444 350 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 MTND3P22-201ENST00000510932 243 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 RNY4P20-201ENST00000516678 93 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 FTX_4.1-201ENST00000616291 147 ntBASIC-1.4□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 RNU6-643P-201ENST00000384018 107 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 SNORD116-6-201ENST00000384711 96 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 Y_RNA.599-201ENST00000410489 109 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 RNU2-38P-201ENST00000410856 79 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 RNU7-88P-201ENST00000458752 63 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 RNU6-956P-201ENST00000458868 103 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 SNORD4B-201ENST00000459083 72 ntBASIC-1.41□□□□□ -2.63
CHD9Q3L8U1 AL021921.1-201ENST00000442774 93 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 SNORA40.14-201ENST00000516543 86 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 MIR1255B1-201ENST00000636325 63 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RNU6-246P-201ENST00000384702 107 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RNU6-493P-201ENST00000391321 108 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RNU7-152P-201ENST00000458982 64 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RNU6-976P-201ENST00000516086 111 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 MIR3140-201ENST00000583685 90 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 RPS29P30-201ENST00000600975 111 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 AL442128.1-201ENST00000615151 90 ntBASIC-1.41□□□□□ -2.64
CHD9Q3L8U1 MT-TI-201ENST00000387365 69 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 MIR548I1-201ENST00000408810 149 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 RNU6-121P-201ENST00000410525 99 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 AL118496.2-201ENST00000448300 230 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 AC103591.3-201ENST00000608684 209 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 AC025253.1-201ENST00000613623 543 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 RNU6-978P-201ENST00000364371 103 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 RNU6-841P-201ENST00000383872 107 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 RNU6-890P-201ENST00000384121 107 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 AC020661.2-201ENST00000560114 134 ntBASIC-1.42□□□□□ -2.64
CHD9Q3L8U1 MIR3149-201ENST00000584629 83 ntBASIC-1.43□□□□□ -2.64
CHD9Q3L8U1 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.43□□□□□ -2.64
CHD9Q3L8U1 RNA5SP292-201ENST00000390974 118 ntBASIC-1.43□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.89-201ENST00000363031 102 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 RNU6-132P-201ENST00000383863 107 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.554-201ENST00000384672 102 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 RNU6-258P-201ENST00000390884 101 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 AC104985.2-201ENST00000620598 500 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 SNORA7.5-201ENST00000410672 110 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.635-201ENST00000459041 101 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 RNU6-1143P-201ENST00000516125 104 ntBASIC-1.44□□□□□ -2.64
CHD9Q3L8U1 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNU6-578P-201ENST00000390980 103 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNU6-1148P-201ENST00000410992 104 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNU6-651P-201ENST00000411040 105 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNU6-415P-201ENST00000516252 97 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 MIR3123-201ENST00000583417 75 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNA5SP136-201ENST00000410906 107 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 MIR5690-201ENST00000583739 73 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 RNU6-363P-201ENST00000362895 105 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 ELOCP20-201ENST00000422460 345 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 AL691482.2-201ENST00000457453 84 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 MIR3163-201ENST00000581592 73 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 AC090582.1-201ENST00000636321 199 ntBASIC-1.45□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 RNU6-616P-201ENST00000384353 107 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.46□□□□□ -2.64
CHD9Q3L8U1 RNY4P25-201ENST00000459254 96 ntBASIC-1.46□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms