Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 RNU6-935P-201ENST00000410371 100 ntBASIC0.74□□□□□ -2.29
TTC3P53804 RPL39P28-201ENST00000465655 155 ntBASIC0.74□□□□□ -2.29
TTC3P53804 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.74□□□□□ -2.29
TTC3P53804 RNU6-1265P-201ENST00000516342 103 ntBASIC0.74□□□□□ -2.29
TTC3P53804 MIR4661-201ENST00000582720 75 ntBASIC0.74□□□□□ -2.29
TTC3P53804 AC243829.6-201ENST00000612652 106 ntBASIC0.74□□□□□ -2.29
TTC3P53804 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
TTC3P53804 RNU6-478P-201ENST00000363904 110 ntBASIC0.74□□□□□ -2.29
TTC3P53804 RNU4-45P-201ENST00000365469 141 ntBASIC0.74□□□□□ -2.29
TTC3P53804 MIR644A-201ENST00000385262 94 ntBASIC0.74□□□□□ -2.29
TTC3P53804 SNORD77.2-201ENST00000391045 68 ntBASIC0.74□□□□□ -2.29
TTC3P53804 MIR330-201ENST00000362196 94 ntBASIC0.73□□□□□ -2.29
TTC3P53804 Y_RNA.12-201ENST00000362393 112 ntBASIC0.73□□□□□ -2.29
TTC3P53804 RNU6-208P-201ENST00000362431 107 ntBASIC0.73□□□□□ -2.29
TTC3P53804 Y_RNA.221-201ENST00000364248 96 ntBASIC0.73□□□□□ -2.29
TTC3P53804 Y_RNA.264-201ENST00000364665 102 ntBASIC0.73□□□□□ -2.29
TTC3P53804 RNU6-1296P-201ENST00000383879 107 ntBASIC0.73□□□□□ -2.29
TTC3P53804 RNU6-242P-201ENST00000384359 107 ntBASIC0.73□□□□□ -2.29
TTC3P53804 SNORD41.1-201ENST00000391000 69 ntBASIC0.73□□□□□ -2.29
TTC3P53804 MIR3920-201ENST00000581751 86 ntBASIC0.73□□□□□ -2.29
TTC3P53804 RNU6-315P-201ENST00000362666 107 ntBASIC0.72□□□□□ -2.29
TTC3P53804 RNA5SP499-201ENST00000363982 119 ntBASIC0.72□□□□□ -2.29
TTC3P53804 RNU2-59P-201ENST00000410482 191 ntBASIC0.72□□□□□ -2.29
TTC3P53804 AC092628.1-201ENST00000436250 252 ntBASIC0.72□□□□□ -2.29
TTC3P53804 MIR146A-201ENST00000385201 99 ntBASIC0.72□□□□□ -2.29
TTC3P53804 RNU7-24P-201ENST00000458867 62 ntBASIC0.72□□□□□ -2.29
TTC3P53804 MIR3675-201ENST00000583661 73 ntBASIC0.72□□□□□ -2.29
TTC3P53804 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.72□□□□□ -2.29
TTC3P53804 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.71□□□□□ -2.3
TTC3P53804 MIR6755-201ENST00000619993 66 ntBASIC0.71□□□□□ -2.3
TTC3P53804 Y_RNA.244-201ENST00000364484 109 ntBASIC0.71□□□□□ -2.3
TTC3P53804 SNORD115-44-201ENST00000365391 82 ntBASIC0.71□□□□□ -2.3
TTC3P53804 RNU6-716P-201ENST00000365621 103 ntBASIC0.71□□□□□ -2.3
TTC3P53804 MIR508-201ENST00000384857 115 ntBASIC0.71□□□□□ -2.3
TTC3P53804 MIR519E-201ENST00000385075 84 ntBASIC0.71□□□□□ -2.3
TTC3P53804 RNA5SP193-201ENST00000410353 107 ntBASIC0.71□□□□□ -2.3
TTC3P53804 AL590095.2-201ENST00000604136 117 ntBASIC0.71□□□□□ -2.3
TTC3P53804 SNORD115-24-201ENST00000363528 82 ntBASIC0.7□□□□□ -2.3
TTC3P53804 RNU6-1177P-201ENST00000391058 104 ntBASIC0.7□□□□□ -2.3
TTC3P53804 MIR2113-201ENST00000459007 91 ntBASIC0.7□□□□□ -2.3
TTC3P53804 RNA5SP47-201ENST00000517230 109 ntBASIC0.7□□□□□ -2.3
TTC3P53804 MIR4711-201ENST00000578274 70 ntBASIC0.7□□□□□ -2.3
TTC3P53804 MIR3612-201ENST00000579753 87 ntBASIC0.7□□□□□ -2.3
TTC3P53804 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.7□□□□□ -2.3
TTC3P53804 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.7□□□□□ -2.3
TTC3P53804 RNU6-495P-201ENST00000362995 107 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU7-104P-201ENST00000459398 79 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU6-1094P-201ENST00000362416 104 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU6V-201ENST00000384105 107 ntBASIC0.69□□□□□ -2.3
TTC3P53804 U3.27-201ENST00000391237 200 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU7-74P-201ENST00000459104 62 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU6-229P-201ENST00000516614 102 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU6-557P-201ENST00000516842 110 ntBASIC0.69□□□□□ -2.3
TTC3P53804 MIR3140-201ENST00000583685 90 ntBASIC0.69□□□□□ -2.3
TTC3P53804 MIR4712-201ENST00000583750 82 ntBASIC0.69□□□□□ -2.3
TTC3P53804 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
TTC3P53804 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
TTC3P53804 U7.4-201ENST00000614961 63 ntBASIC0.69□□□□□ -2.3
TTC3P53804 RNU6-1108P-201ENST00000516308 104 ntBASIC0.68□□□□□ -2.3
TTC3P53804 RNU6-303P-201ENST00000517091 106 ntBASIC0.68□□□□□ -2.3
TTC3P53804 MIR3678-201ENST00000578455 94 ntBASIC0.68□□□□□ -2.3
TTC3P53804 MIR548AG2-201ENST00000581228 64 ntBASIC0.68□□□□□ -2.3
TTC3P53804 AC104996.3-201ENST00000590718 94 ntBASIC0.68□□□□□ -2.3
TTC3P53804 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
TTC3P53804 RNA5SP403-201ENST00000363598 108 ntBASIC0.67□□□□□ -2.3
TTC3P53804 RNU6-1187P-201ENST00000364771 110 ntBASIC0.67□□□□□ -2.3
TTC3P53804 Y_RNA.316-201ENST00000365118 111 ntBASIC0.67□□□□□ -2.3
TTC3P53804 MT-TY-201ENST00000387409 66 ntBASIC0.67□□□□□ -2.3
TTC3P53804 AC093423.1-201ENST00000440817 142 ntBASIC0.67□□□□□ -2.3
TTC3P53804 MIR1273G-201ENST00000577677 100 ntBASIC0.67□□□□□ -2.3
TTC3P53804 AC069503.3-201ENST00000618674 145 ntBASIC0.67□□□□□ -2.3
TTC3P53804 MIRLET7A1-201ENST00000362295 80 ntBASIC0.67□□□□□ -2.3
TTC3P53804 RNA5SP347-201ENST00000362445 119 ntBASIC0.67□□□□□ -2.3
TTC3P53804 SNORD115-22-201ENST00000364456 82 ntBASIC0.67□□□□□ -2.3
TTC3P53804 MIR193B-201ENST00000384907 83 ntBASIC0.67□□□□□ -2.3
TTC3P53804 Y_RNA.660-201ENST00000516002 120 ntBASIC0.67□□□□□ -2.3
TTC3P53804 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.67□□□□□ -2.3
TTC3P53804 RNA5SP222-201ENST00000411039 105 ntBASIC0.66□□□□□ -2.3
TTC3P53804 RNU6-70P-201ENST00000516438 60 ntBASIC0.66□□□□□ -2.3
TTC3P53804 MIR4662A-201ENST00000637499 67 ntBASIC0.66□□□□□ -2.3
TTC3P53804 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.3
TTC3P53804 RNU6-1015P-201ENST00000517121 99 ntBASIC0.65□□□□□ -2.3
TTC3P53804 AL353765.1-201ENST00000605514 183 ntBASIC0.65□□□□□ -2.3
TTC3P53804 AC092634.7-201ENST00000621022 103 ntBASIC0.65□□□□□ -2.31
TTC3P53804 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
TTC3P53804 RNU6-340P-201ENST00000364005 107 ntBASIC0.64□□□□□ -2.31
TTC3P53804 SNORA24B-201ENST00000384176 131 ntBASIC0.64□□□□□ -2.31
TTC3P53804 RNU6-129P-201ENST00000391022 107 ntBASIC0.64□□□□□ -2.31
TTC3P53804 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.64□□□□□ -2.31
TTC3P53804 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TTC3P53804 Y_RNA.532-201ENST00000384590 113 ntBASIC0.64□□□□□ -2.31
TTC3P53804 MIR140-201ENST00000385282 100 ntBASIC0.64□□□□□ -2.31
TTC3P53804 RNU6-274P-201ENST00000459566 107 ntBASIC0.64□□□□□ -2.31
TTC3P53804 MIR6739-201ENST00000622461 75 ntBASIC0.64□□□□□ -2.31
TTC3P53804 SNORD114-4-201ENST00000363962 75 ntBASIC0.63□□□□□ -2.31
TTC3P53804 MIR154-201ENST00000385243 84 ntBASIC0.63□□□□□ -2.31
TTC3P53804 AC097510.1-201ENST00000510945 133 ntBASIC0.63□□□□□ -2.31
TTC3P53804 MIR6828-201ENST00000636181 60 ntBASIC0.63□□□□□ -2.31
TTC3P53804 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
TTC3P53804 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 238.5 ms