Protein–RNA interactions for Protein: P49754

VPS41, Vacuolar protein sorting-associated protein 41 homolog, humanhuman

Predictions only

Length 854 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41P49754 RNU6-402P-201ENST00000410678 103 ntBASIC0.37□□□□□ -2.35
VPS41P49754 AC243829.6-201ENST00000612652 106 ntBASIC0.37□□□□□ -2.35
VPS41P49754 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.37□□□□□ -2.35
VPS41P49754 Y_RNA.369-201ENST00000365568 117 ntBASIC0.36□□□□□ -2.35
VPS41P49754 SNORD90-201ENST00000391145 111 ntBASIC0.36□□□□□ -2.35
VPS41P49754 U3.27-201ENST00000391237 200 ntBASIC0.36□□□□□ -2.35
VPS41P49754 MIR1236-201ENST00000408340 102 ntBASIC0.36□□□□□ -2.35
VPS41P49754 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
VPS41P49754 RNU6-267P-201ENST00000516714 103 ntBASIC0.36□□□□□ -2.35
VPS41P49754 RNU6-1057P-201ENST00000517162 102 ntBASIC0.36□□□□□ -2.35
VPS41P49754 AC069503.3-201ENST00000618674 145 ntBASIC0.36□□□□□ -2.35
VPS41P49754 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
VPS41P49754 Y_RNA.355-201ENST00000365462 98 ntBASIC0.35□□□□□ -2.35
VPS41P49754 MIR598-201ENST00000384868 97 ntBASIC0.35□□□□□ -2.35
VPS41P49754 MIR216B-201ENST00000390186 82 ntBASIC0.35□□□□□ -2.35
VPS41P49754 MIR936-201ENST00000401264 98 ntBASIC0.35□□□□□ -2.35
VPS41P49754 SNORD110-201ENST00000408189 75 ntBASIC0.35□□□□□ -2.35
VPS41P49754 AC006210.1-201ENST00000424882 111 ntBASIC0.35□□□□□ -2.35
VPS41P49754 RNA5SP170-201ENST00000517150 101 ntBASIC0.35□□□□□ -2.35
VPS41P49754 MIR548O2-201ENST00000616090 70 ntBASIC0.35□□□□□ -2.35
VPS41P49754 SNORA63.2-201ENST00000362603 126 ntBASIC0.34□□□□□ -2.36
VPS41P49754 RNU6-1051P-201ENST00000365471 102 ntBASIC0.34□□□□□ -2.36
VPS41P49754 RNU6-815P-201ENST00000384080 113 ntBASIC0.34□□□□□ -2.36
VPS41P49754 MIR519C-201ENST00000385053 87 ntBASIC0.34□□□□□ -2.36
VPS41P49754 MIR760-201ENST00000390220 80 ntBASIC0.34□□□□□ -2.36
VPS41P49754 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
VPS41P49754 Y_RNA.593-201ENST00000410292 98 ntBASIC0.34□□□□□ -2.36
VPS41P49754 HMGN2P22-201ENST00000427588 175 ntBASIC0.34□□□□□ -2.36
VPS41P49754 RNU7-153P-201ENST00000516455 62 ntBASIC0.34□□□□□ -2.36
VPS41P49754 MIR4460-201ENST00000577862 86 ntBASIC0.34□□□□□ -2.36
VPS41P49754 MIR3140-201ENST00000583685 90 ntBASIC0.34□□□□□ -2.36
VPS41P49754 Y_RNA.17-201ENST00000362433 111 ntBASIC0.33□□□□□ -2.36
VPS41P49754 SNORA24B-201ENST00000384176 131 ntBASIC0.33□□□□□ -2.36
VPS41P49754 Y_RNA.558-201ENST00000384685 113 ntBASIC0.33□□□□□ -2.36
VPS41P49754 RNA5SP436-201ENST00000516020 115 ntBASIC0.33□□□□□ -2.36
VPS41P49754 MIR4711-201ENST00000578274 70 ntBASIC0.33□□□□□ -2.36
VPS41P49754 MIR4796-201ENST00000580742 81 ntBASIC0.33□□□□□ -2.36
VPS41P49754 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
VPS41P49754 RNA5SP62-201ENST00000363457 110 ntBASIC0.32□□□□□ -2.36
VPS41P49754 RNA5SP128-201ENST00000365305 116 ntBASIC0.32□□□□□ -2.36
VPS41P49754 MIR501-201ENST00000390204 84 ntBASIC0.32□□□□□ -2.36
VPS41P49754 FGF7P7-201ENST00000514120 227 ntBASIC0.32□□□□□ -2.36
VPS41P49754 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.32□□□□□ -2.36
VPS41P49754 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
VPS41P49754 Y_RNA.125-201ENST00000363371 111 ntBASIC0.31□□□□□ -2.36
VPS41P49754 RNU6-294P-201ENST00000364999 102 ntBASIC0.31□□□□□ -2.36
VPS41P49754 RNU6-1134P-201ENST00000365156 101 ntBASIC0.31□□□□□ -2.36
VPS41P49754 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
VPS41P49754 RNU6-1052P-201ENST00000411398 104 ntBASIC0.31□□□□□ -2.36
VPS41P49754 AC073261.1-201ENST00000429409 121 ntBASIC0.31□□□□□ -2.36
VPS41P49754 RNU6-719P-201ENST00000516671 104 ntBASIC0.31□□□□□ -2.36
VPS41P49754 AC069113.3-201ENST00000521019 150 ntBASIC0.31□□□□□ -2.36
VPS41P49754 YWHAEP2-201ENST00000580066 112 ntBASIC0.31□□□□□ -2.36
VPS41P49754 SNORD114-23-201ENST00000363536 72 ntBASIC0.3□□□□□ -2.36
VPS41P49754 RNU5B-6P-201ENST00000516765 68 ntBASIC0.3□□□□□ -2.36
VPS41P49754 MIR548AD-201ENST00000584780 82 ntBASIC0.3□□□□□ -2.36
VPS41P49754 SNORA9.1-201ENST00000362412 131 ntBASIC0.29□□□□□ -2.36
VPS41P49754 U7.6-201ENST00000610841 64 ntBASIC0.29□□□□□ -2.36
VPS41P49754 MIR548BB-201ENST00000626714 66 ntBASIC0.29□□□□□ -2.36
VPS41P49754 RNU6V-201ENST00000384105 107 ntBASIC0.28□□□□□ -2.36
VPS41P49754 RNA5SP193-201ENST00000410353 107 ntBASIC0.28□□□□□ -2.36
VPS41P49754 SNORA25.13-201ENST00000516395 103 ntBASIC0.28□□□□□ -2.36
VPS41P49754 MIR4677-201ENST00000584153 80 ntBASIC0.28□□□□□ -2.36
VPS41P49754 Y_RNA.118-201ENST00000363300 101 ntBASIC0.27□□□□□ -2.37
VPS41P49754 RNU6-127P-201ENST00000390897 107 ntBASIC0.27□□□□□ -2.37
VPS41P49754 MIR499B-201ENST00000636498 73 ntBASIC0.27□□□□□ -2.37
VPS41P49754 Y_RNA.43-201ENST00000362670 111 ntBASIC0.26□□□□□ -2.37
VPS41P49754 RNY4P3-201ENST00000365254 95 ntBASIC0.26□□□□□ -2.37
VPS41P49754 RNU6-54P-201ENST00000365563 107 ntBASIC0.26□□□□□ -2.37
VPS41P49754 snoU13.17-201ENST00000458802 104 ntBASIC0.26□□□□□ -2.37
VPS41P49754 AC093729.1-201ENST00000513074 128 ntBASIC0.26□□□□□ -2.37
VPS41P49754 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.26□□□□□ -2.37
VPS41P49754 MIR548AE1-201ENST00000583292 70 ntBASIC0.26□□□□□ -2.37
VPS41P49754 MIR4473-201ENST00000583731 91 ntBASIC0.26□□□□□ -2.37
VPS41P49754 AC010487.4-201ENST00000637027 61 ntBASIC0.26□□□□□ -2.37
VPS41P49754 RNU6-1255P-201ENST00000363434 112 ntBASIC0.25□□□□□ -2.37
VPS41P49754 Y_RNA.437-201ENST00000384113 113 ntBASIC0.25□□□□□ -2.37
VPS41P49754 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.25□□□□□ -2.37
VPS41P49754 RNU7-129P-201ENST00000516128 62 ntBASIC0.25□□□□□ -2.37
VPS41P49754 AC140658.3-201ENST00000567603 271 ntBASIC0.25□□□□□ -2.37
VPS41P49754 MIR4315-1-201ENST00000636800 73 ntBASIC0.25□□□□□ -2.37
VPS41P49754 MIR4315-2-201ENST00000640925 73 ntBASIC0.25□□□□□ -2.37
VPS41P49754 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
VPS41P49754 MIR3925-201ENST00000584674 77 ntBASIC0.24□□□□□ -2.37
VPS41P49754 RNU6-161P-201ENST00000363051 106 ntBASIC0.23□□□□□ -2.37
VPS41P49754 RNU6-624P-201ENST00000363411 107 ntBASIC0.23□□□□□ -2.37
VPS41P49754 SNORD115-37-201ENST00000363768 82 ntBASIC0.23□□□□□ -2.37
VPS41P49754 Y_RNA.258-201ENST00000364613 105 ntBASIC0.23□□□□□ -2.37
VPS41P49754 Y_RNA.407-201ENST00000383986 113 ntBASIC0.23□□□□□ -2.37
VPS41P49754 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
VPS41P49754 RNU6-1177P-201ENST00000391058 104 ntBASIC0.23□□□□□ -2.37
VPS41P49754 Y_RNA.611-201ENST00000410682 108 ntBASIC0.23□□□□□ -2.37
VPS41P49754 RNU6-782P-201ENST00000516852 104 ntBASIC0.23□□□□□ -2.37
VPS41P49754 AC006160.2-201ENST00000637708 154 ntBASIC0.23□□□□□ -2.37
VPS41P49754 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
VPS41P49754 RNU5F-1-201ENST00000362507 117 ntBASIC0.22□□□□□ -2.37
VPS41P49754 Y_RNA.73-201ENST00000362910 113 ntBASIC0.22□□□□□ -2.37
VPS41P49754 RNU6-495P-201ENST00000362995 107 ntBASIC0.22□□□□□ -2.37
VPS41P49754 RNY1P1-201ENST00000364372 112 ntBASIC0.22□□□□□ -2.37
VPS41P49754 SNORD42B-201ENST00000458893 67 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 268.2 ms