Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MIR329-2-201ENST00000385029 84 ntBASIC-0.3□□□□□ -2.46
LHX1P48742 MIR652-201ENST00000385278 98 ntBASIC-0.3□□□□□ -2.46
LHX1P48742 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.3□□□□□ -2.46
LHX1P48742 RNU6-75P-201ENST00000515944 104 ntBASIC-0.3□□□□□ -2.46
LHX1P48742 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.3□□□□□ -2.46
LHX1P48742 MIR20A-201ENST00000362279 71 ntBASIC-0.31□□□□□ -2.46
LHX1P48742 SNORD56B-201ENST00000384713 71 ntBASIC-0.31□□□□□ -2.46
LHX1P48742 RNU6-65P-201ENST00000516332 98 ntBASIC-0.31□□□□□ -2.46
LHX1P48742 RNA5SP169-201ENST00000517268 117 ntBASIC-0.31□□□□□ -2.46
LHX1P48742 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 MIR582-201ENST00000365731 98 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 RNU6-455P-201ENST00000384681 107 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 AL513043.2-201ENST00000573941 143 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 MIR4432-201ENST00000581823 84 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 MIR4280-201ENST00000582178 76 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 MIR4536-1-201ENST00000583537 88 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 MIR4263-201ENST00000584745 83 ntBASIC-0.32□□□□□ -2.46
LHX1P48742 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU4-36P-201ENST00000364294 144 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU6-880P-201ENST00000384526 107 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 MIR451A-201ENST00000385059 72 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 MT-TR-201ENST00000387439 65 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU6-284P-201ENST00000411105 106 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 AC244090.1-201ENST00000441884 93 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 RNU6-412P-201ENST00000516434 106 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 AL391099.1-201ENST00000624635 187 ntBASIC-0.33□□□□□ -2.46
LHX1P48742 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 RNU6-900P-201ENST00000384498 102 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 MIR214-201ENST00000385214 110 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 U3.27-201ENST00000391237 200 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 RNU7-85P-201ENST00000458851 63 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 RNU7-55P-201ENST00000459426 62 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 AC114755.3-201ENST00000481111 251 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 AC097510.1-201ENST00000510945 133 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 RNA5SP66-201ENST00000517178 101 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 MIR4436A-201ENST00000585278 85 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.34□□□□□ -2.46
LHX1P48742 RNU6-54P-201ENST00000365563 107 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 SNORD116-21-201ENST00000384507 92 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 RNU6-813P-201ENST00000384691 107 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 SNORD42B-201ENST00000458893 67 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 RNA5SP285-201ENST00000516619 119 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 uc_338.36-201ENST00000622331 158 ntBASIC-0.35□□□□□ -2.47
LHX1P48742 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6-644P-201ENST00000391155 98 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 MIR548E-201ENST00000408287 88 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6-719P-201ENST00000516671 104 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6-762P-201ENST00000517107 102 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 AP000676.1-201ENST00000533307 52 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 AC103810.7-201ENST00000607821 91 ntBASIC-0.36□□□□□ -2.47
LHX1P48742 RNU6-132P-201ENST00000383863 107 ntBASIC-0.37□□□□□ -2.47
LHX1P48742 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.37□□□□□ -2.47
LHX1P48742 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.37□□□□□ -2.47
LHX1P48742 RNU6-476P-201ENST00000384726 107 ntBASIC-0.37□□□□□ -2.47
LHX1P48742 snoU13.13-201ENST00000458842 104 ntBASIC-0.37□□□□□ -2.47
LHX1P48742 RNU6-502P-201ENST00000362419 108 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 SNORD115-25-201ENST00000362619 82 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 SNORD114-14-201ENST00000362723 75 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 RNU6-959P-201ENST00000384671 107 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 SNORA32.3-201ENST00000384772 121 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 MIR4777-201ENST00000583710 86 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 MIR548AZ-201ENST00000616567 95 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 MIR6851-201ENST00000617060 67 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 MIR6759-201ENST00000638110 65 ntBASIC-0.38□□□□□ -2.47
LHX1P48742 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.39□□□□□ -2.47
LHX1P48742 AL445193.1-201ENST00000441183 141 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 RPS29P8-201ENST00000445109 171 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.39□□□□□ -2.47
LHX1P48742 SNORD4B-201ENST00000459083 72 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 FGF7P7-201ENST00000514120 227 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 RNU6-795P-201ENST00000516323 103 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 SNORD38.3-201ENST00000516599 73 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 MIR548Z-201ENST00000584743 97 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 AC012531.4-201ENST00000616509 177 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 AC093726.3-201ENST00000637588 150 ntBASIC-0.39□□□□□ -2.47
LHX1P48742 SNORD114-4-201ENST00000363962 75 ntBASIC-0.4□□□□□ -2.47
LHX1P48742 SNORA24B-201ENST00000384176 131 ntBASIC-0.4□□□□□ -2.47
LHX1P48742 AC008267.6-201ENST00000441664 139 ntBASIC-0.4□□□□□ -2.47
LHX1P48742 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
LHX1P48742 MIR8068-201ENST00000618032 68 ntBASIC-0.4□□□□□ -2.47
LHX1P48742 SNORA63.2-201ENST00000362603 126 ntBASIC-0.41□□□□□ -2.48
LHX1P48742 RNU6-973P-201ENST00000364690 107 ntBASIC-0.41□□□□□ -2.48
LHX1P48742 MIR548U-201ENST00000390728 81 ntBASIC-0.41□□□□□ -2.48
LHX1P48742 RNU6-337P-201ENST00000391243 106 ntBASIC-0.41□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms