Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 snoU13.17-201ENST00000458802 104 ntBASIC0.46□□□□□ -2.34
RFX2P48378 RNA5SP121-201ENST00000516537 101 ntBASIC0.46□□□□□ -2.34
RFX2P48378 MIR4460-201ENST00000577862 86 ntBASIC0.46□□□□□ -2.34
RFX2P48378 RNU1-29P-201ENST00000606574 126 ntBASIC0.46□□□□□ -2.34
RFX2P48378 RNU5F-1-201ENST00000362507 117 ntBASIC0.45□□□□□ -2.34
RFX2P48378 RNU1-93P-201ENST00000364704 169 ntBASIC0.45□□□□□ -2.34
RFX2P48378 RNU6-573P-201ENST00000383938 106 ntBASIC0.45□□□□□ -2.34
RFX2P48378 RNU6-1152P-201ENST00000384576 107 ntBASIC0.45□□□□□ -2.34
RFX2P48378 U3.27-201ENST00000391237 200 ntBASIC0.45□□□□□ -2.34
RFX2P48378 RNU2-59P-201ENST00000410482 191 ntBASIC0.45□□□□□ -2.34
RFX2P48378 Y_RNA.607-201ENST00000410597 98 ntBASIC0.45□□□□□ -2.34
RFX2P48378 AC006210.1-201ENST00000424882 111 ntBASIC0.45□□□□□ -2.34
RFX2P48378 CYP3A137P-201ENST00000562436 69 ntBASIC0.45□□□□□ -2.34
RFX2P48378 AC073869.9-201ENST00000641610 120 ntBASIC0.45□□□□□ -2.34
RFX2P48378 Y_RNA.164-201ENST00000363709 102 ntBASIC0.44□□□□□ -2.34
RFX2P48378 RNU6V-201ENST00000384105 107 ntBASIC0.44□□□□□ -2.34
RFX2P48378 MIR520E-201ENST00000384867 87 ntBASIC0.44□□□□□ -2.34
RFX2P48378 SNORD110-201ENST00000408189 75 ntBASIC0.44□□□□□ -2.34
RFX2P48378 RNU7-171P-201ENST00000459581 62 ntBASIC0.44□□□□□ -2.34
RFX2P48378 RNU6-1108P-201ENST00000516308 104 ntBASIC0.44□□□□□ -2.34
RFX2P48378 MIR548O2-201ENST00000616090 70 ntBASIC0.44□□□□□ -2.34
RFX2P48378 MIR6755-201ENST00000619993 66 ntBASIC0.44□□□□□ -2.34
RFX2P48378 MIR103A1-201ENST00000362165 78 ntBASIC0.43□□□□□ -2.34
RFX2P48378 SNORD44.1-201ENST00000363202 61 ntBASIC0.43□□□□□ -2.34
RFX2P48378 SNORD114-22-201ENST00000365423 72 ntBASIC0.43□□□□□ -2.34
RFX2P48378 SNORA24B-201ENST00000384176 131 ntBASIC0.43□□□□□ -2.34
RFX2P48378 MT-TY-201ENST00000387409 66 ntBASIC0.43□□□□□ -2.34
RFX2P48378 MIR216B-201ENST00000390186 82 ntBASIC0.43□□□□□ -2.34
RFX2P48378 AL450471.1-201ENST00000447509 127 ntBASIC0.43□□□□□ -2.34
RFX2P48378 RNU5B-6P-201ENST00000516765 68 ntBASIC0.43□□□□□ -2.34
RFX2P48378 MIR4452-201ENST00000583004 71 ntBASIC0.43□□□□□ -2.34
RFX2P48378 RNU6-161P-201ENST00000363051 106 ntBASIC0.42□□□□□ -2.34
RFX2P48378 Y_RNA.437-201ENST00000384113 113 ntBASIC0.42□□□□□ -2.34
RFX2P48378 RNU6-1232P-201ENST00000516299 86 ntBASIC0.42□□□□□ -2.34
RFX2P48378 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.42□□□□□ -2.34
RFX2P48378 RNU6-229P-201ENST00000516614 102 ntBASIC0.42□□□□□ -2.34
RFX2P48378 YWHAEP2-201ENST00000580066 112 ntBASIC0.42□□□□□ -2.34
RFX2P48378 MIR4473-201ENST00000583731 91 ntBASIC0.42□□□□□ -2.34
RFX2P48378 MIR8070-201ENST00000616510 88 ntBASIC0.42□□□□□ -2.34
RFX2P48378 RNU6-208P-201ENST00000362431 107 ntBASIC0.41□□□□□ -2.34
RFX2P48378 RNU6-624P-201ENST00000363411 107 ntBASIC0.41□□□□□ -2.34
RFX2P48378 RNU6-652P-201ENST00000365488 107 ntBASIC0.41□□□□□ -2.34
RFX2P48378 RNU6-54P-201ENST00000365563 107 ntBASIC0.41□□□□□ -2.34
RFX2P48378 SNORA2A-201ENST00000383885 135 ntBASIC0.41□□□□□ -2.34
RFX2P48378 RPS29P1-201ENST00000465274 159 ntBASIC0.41□□□□□ -2.34
RFX2P48378 AC069503.3-201ENST00000618674 145 ntBASIC0.41□□□□□ -2.34
RFX2P48378 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.41□□□□□ -2.34
RFX2P48378 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
RFX2P48378 Y_RNA.316-201ENST00000365118 111 ntBASIC0.4□□□□□ -2.35
RFX2P48378 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
RFX2P48378 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
RFX2P48378 SNORD77.2-201ENST00000391045 68 ntBASIC0.4□□□□□ -2.35
RFX2P48378 RNU6-1177P-201ENST00000391058 104 ntBASIC0.4□□□□□ -2.35
RFX2P48378 AL078603.1-201ENST00000603824 313 ntBASIC0.4□□□□□ -2.35
RFX2P48378 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.4□□□□□ -2.35
RFX2P48378 RNU6-478P-201ENST00000363904 110 ntBASIC0.39□□□□□ -2.35
RFX2P48378 Y_RNA.258-201ENST00000364613 105 ntBASIC0.39□□□□□ -2.35
RFX2P48378 RNU6-787P-201ENST00000384032 107 ntBASIC0.39□□□□□ -2.35
RFX2P48378 MIR499A-201ENST00000384903 122 ntBASIC0.39□□□□□ -2.35
RFX2P48378 MIR760-201ENST00000390220 80 ntBASIC0.39□□□□□ -2.35
RFX2P48378 RNU6-129P-201ENST00000391022 107 ntBASIC0.38□□□□□ -2.35
RFX2P48378 HMGN2P22-201ENST00000427588 175 ntBASIC0.38□□□□□ -2.35
RFX2P48378 RNU7-129P-201ENST00000516128 62 ntBASIC0.38□□□□□ -2.35
RFX2P48378 SNORA72.7-201ENST00000516349 94 ntBASIC0.38□□□□□ -2.35
RFX2P48378 MIR4666B-201ENST00000578142 81 ntBASIC0.38□□□□□ -2.35
RFX2P48378 MIR5706-201ENST00000579841 80 ntBASIC0.38□□□□□ -2.35
RFX2P48378 MIR151B-201ENST00000584249 96 ntBASIC0.38□□□□□ -2.35
RFX2P48378 MIR6788-201ENST00000618842 66 ntBASIC0.38□□□□□ -2.35
RFX2P48378 RNA5SP347-201ENST00000362445 119 ntBASIC0.37□□□□□ -2.35
RFX2P48378 RNU6-824P-201ENST00000363724 104 ntBASIC0.37□□□□□ -2.35
RFX2P48378 RNA5SP499-201ENST00000363982 119 ntBASIC0.37□□□□□ -2.35
RFX2P48378 Y_RNA.313-201ENST00000365095 103 ntBASIC0.37□□□□□ -2.35
RFX2P48378 Y_RNA.371-201ENST00000365591 113 ntBASIC0.37□□□□□ -2.35
RFX2P48378 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.37□□□□□ -2.35
RFX2P48378 AC097510.1-201ENST00000510945 133 ntBASIC0.37□□□□□ -2.35
RFX2P48378 RNU6-863P-201ENST00000515989 104 ntBASIC0.37□□□□□ -2.35
RFX2P48378 MIR5000-201ENST00000577717 103 ntBASIC0.37□□□□□ -2.35
RFX2P48378 MIR1245B-201ENST00000636115 69 ntBASIC0.37□□□□□ -2.35
RFX2P48378 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.36□□□□□ -2.35
RFX2P48378 MIR548J-201ENST00000408833 112 ntBASIC0.36□□□□□ -2.35
RFX2P48378 SNORD42B-201ENST00000458893 67 ntBASIC0.36□□□□□ -2.35
RFX2P48378 MIR4714-201ENST00000580728 77 ntBASIC0.36□□□□□ -2.35
RFX2P48378 MIR548AE1-201ENST00000583292 70 ntBASIC0.36□□□□□ -2.35
RFX2P48378 MIR5087-201ENST00000635826 76 ntBASIC0.36□□□□□ -2.35
RFX2P48378 MIR4773-1-201ENST00000637203 78 ntBASIC0.36□□□□□ -2.35
RFX2P48378 Y_RNA.12-201ENST00000362393 112 ntBASIC0.35□□□□□ -2.35
RFX2P48378 Y_RNA.224-201ENST00000364308 111 ntBASIC0.35□□□□□ -2.35
RFX2P48378 RNU6-382P-201ENST00000365181 106 ntBASIC0.35□□□□□ -2.35
RFX2P48378 MIR501-201ENST00000390204 84 ntBASIC0.35□□□□□ -2.35
RFX2P48378 AC114737.2-201ENST00000421583 173 ntBASIC0.35□□□□□ -2.35
RFX2P48378 RNU6-557P-201ENST00000516842 110 ntBASIC0.35□□□□□ -2.35
RFX2P48378 MIR499B-201ENST00000636498 73 ntBASIC0.35□□□□□ -2.35
RFX2P48378 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.35□□□□□ -2.35
RFX2P48378 RNU6-495P-201ENST00000362995 107 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNA5SP62-201ENST00000363457 110 ntBASIC0.34□□□□□ -2.36
RFX2P48378 Y_RNA.264-201ENST00000364665 102 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNU6-686P-201ENST00000364839 107 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNA5SP128-201ENST00000365305 116 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNU6-815P-201ENST00000384080 113 ntBASIC0.34□□□□□ -2.36
RFX2P48378 RNU6-1124P-201ENST00000384169 107 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 227 ms