Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR3678-201ENST00000578455 94 ntBASIC1□□□□□ -2.25
MSX2P35548 U6.81-201ENST00000612550 106 ntBASIC1□□□□□ -2.25
MSX2P35548 SNORD114-27-201ENST00000363766 70 ntBASIC0.99□□□□□ -2.25
MSX2P35548 Y_RNA.371-201ENST00000365591 113 ntBASIC0.99□□□□□ -2.25
MSX2P35548 Y_RNA.545-201ENST00000384652 105 ntBASIC0.99□□□□□ -2.25
MSX2P35548 MIR519E-201ENST00000385075 84 ntBASIC0.99□□□□□ -2.25
MSX2P35548 SNORD41.1-201ENST00000391000 69 ntBASIC0.99□□□□□ -2.25
MSX2P35548 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.99□□□□□ -2.25
MSX2P35548 Y_RNA.36-201ENST00000362602 112 ntBASIC0.98□□□□□ -2.25
MSX2P35548 Y_RNA.258-201ENST00000364613 105 ntBASIC0.98□□□□□ -2.25
MSX2P35548 RNU6-154P-201ENST00000384306 106 ntBASIC0.98□□□□□ -2.25
MSX2P35548 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.98□□□□□ -2.25
MSX2P35548 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.98□□□□□ -2.25
MSX2P35548 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
MSX2P35548 RNU6-330P-201ENST00000363015 107 ntBASIC0.97□□□□□ -2.25
MSX2P35548 RNU6-726P-201ENST00000364680 107 ntBASIC0.97□□□□□ -2.25
MSX2P35548 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
MSX2P35548 RNU6-1177P-201ENST00000391058 104 ntBASIC0.97□□□□□ -2.25
MSX2P35548 SNORD99-201ENST00000408612 74 ntBASIC0.97□□□□□ -2.25
MSX2P35548 AC244098.3-201ENST00000424803 96 ntBASIC0.97□□□□□ -2.25
MSX2P35548 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.97□□□□□ -2.25
MSX2P35548 AC103810.9-201ENST00000606688 112 ntBASIC0.97□□□□□ -2.25
MSX2P35548 MIR520E-201ENST00000384867 87 ntBASIC0.96□□□□□ -2.26
MSX2P35548 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.96□□□□□ -2.26
MSX2P35548 MIR664A-201ENST00000626086 82 ntBASIC0.96□□□□□ -2.26
MSX2P35548 MIR18A-201ENST00000362310 71 ntBASIC0.95□□□□□ -2.26
MSX2P35548 RNU6-411P-201ENST00000384451 107 ntBASIC0.95□□□□□ -2.26
MSX2P35548 MIR7-2-201ENST00000384970 110 ntBASIC0.95□□□□□ -2.26
MSX2P35548 AC073261.1-201ENST00000429409 121 ntBASIC0.95□□□□□ -2.26
MSX2P35548 AC093423.1-201ENST00000440817 142 ntBASIC0.95□□□□□ -2.26
MSX2P35548 RPS29P1-201ENST00000465274 159 ntBASIC0.95□□□□□ -2.26
MSX2P35548 SCARNA16.5-201ENST00000517114 183 ntBASIC0.95□□□□□ -2.26
MSX2P35548 AC011195.1-201ENST00000578177 177 ntBASIC0.95□□□□□ -2.26
MSX2P35548 MIR548O2-201ENST00000616090 70 ntBASIC0.95□□□□□ -2.26
MSX2P35548 MIR6515-201ENST00000619843 57 ntBASIC0.95□□□□□ -2.26
MSX2P35548 MIR216B-201ENST00000390186 82 ntBASIC0.94□□□□□ -2.26
MSX2P35548 RNU6-70P-201ENST00000516438 60 ntBASIC0.94□□□□□ -2.26
MSX2P35548 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.94□□□□□ -2.26
MSX2P35548 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.94□□□□□ -2.26
MSX2P35548 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
MSX2P35548 MIR6828-201ENST00000636181 60 ntBASIC0.94□□□□□ -2.26
MSX2P35548 RNU6-681P-201ENST00000364012 104 ntBASIC0.93□□□□□ -2.26
MSX2P35548 RNU1-93P-201ENST00000364704 169 ntBASIC0.93□□□□□ -2.26
MSX2P35548 RNU6-382P-201ENST00000365181 106 ntBASIC0.93□□□□□ -2.26
MSX2P35548 ACA64.5-201ENST00000516207 127 ntBASIC0.93□□□□□ -2.26
MSX2P35548 RNU6-687P-201ENST00000516443 89 ntBASIC0.93□□□□□ -2.26
MSX2P35548 Y_RNA.681-201ENST00000516445 113 ntBASIC0.93□□□□□ -2.26
MSX2P35548 RNU6-1015P-201ENST00000517121 99 ntBASIC0.93□□□□□ -2.26
MSX2P35548 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.93□□□□□ -2.26
MSX2P35548 RNU4-38P-201ENST00000364472 129 ntBASIC0.92□□□□□ -2.26
MSX2P35548 RNU6-716P-201ENST00000365621 103 ntBASIC0.92□□□□□ -2.26
MSX2P35548 SNORA8.1-201ENST00000384250 140 ntBASIC0.92□□□□□ -2.26
MSX2P35548 RNU7-74P-201ENST00000459104 62 ntBASIC0.92□□□□□ -2.26
MSX2P35548 AC087343.1-201ENST00000477341 475 ntBASIC0.92□□□□□ -2.26
MSX2P35548 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.92□□□□□ -2.26
MSX2P35548 MIR4295-201ENST00000585286 85 ntBASIC0.92□□□□□ -2.26
MSX2P35548 AL353765.1-201ENST00000605514 183 ntBASIC0.92□□□□□ -2.26
MSX2P35548 RNU6-495P-201ENST00000362995 107 ntBASIC0.91□□□□□ -2.26
MSX2P35548 SNORA36.1-201ENST00000363424 132 ntBASIC0.91□□□□□ -2.26
MSX2P35548 RNU6-1187P-201ENST00000364771 110 ntBASIC0.91□□□□□ -2.26
MSX2P35548 MIR548L-201ENST00000408303 86 ntBASIC0.91□□□□□ -2.26
MSX2P35548 RNA5SP480-201ENST00000516840 109 ntBASIC0.91□□□□□ -2.26
MSX2P35548 AC022709.1-201ENST00000615967 87 ntBASIC0.91□□□□□ -2.26
MSX2P35548 MIR4773-1-201ENST00000637203 78 ntBASIC0.91□□□□□ -2.26
MSX2P35548 RNU4-45P-201ENST00000365469 141 ntBASIC0.9□□□□□ -2.27
MSX2P35548 RNU6-54P-201ENST00000365563 107 ntBASIC0.9□□□□□ -2.27
MSX2P35548 MIR608-201ENST00000384820 100 ntBASIC0.9□□□□□ -2.27
MSX2P35548 RNU6-269P-201ENST00000391077 97 ntBASIC0.9□□□□□ -2.27
MSX2P35548 RNU6-587P-201ENST00000391282 106 ntBASIC0.9□□□□□ -2.27
MSX2P35548 SNORD75.2-201ENST00000408784 58 ntBASIC0.9□□□□□ -2.27
MSX2P35548 RNU7-24P-201ENST00000458867 62 ntBASIC0.9□□□□□ -2.27
MSX2P35548 AC139453.2-201ENST00000487255 133 ntBASIC0.9□□□□□ -2.27
MSX2P35548 AC211469.2-201ENST00000605461 205 ntBASIC0.9□□□□□ -2.27
MSX2P35548 MIR548J-201ENST00000408833 112 ntBASIC0.89□□□□□ -2.27
MSX2P35548 RNU6-1223P-201ENST00000517124 104 ntBASIC0.89□□□□□ -2.27
MSX2P35548 AL162376.1-201ENST00000624117 175 ntBASIC0.89□□□□□ -2.27
MSX2P35548 SNORA8.2-201ENST00000384372 139 ntBASIC0.88□□□□□ -2.27
MSX2P35548 RNU6-1241P-201ENST00000384536 107 ntBASIC0.88□□□□□ -2.27
MSX2P35548 MT-TY-201ENST00000387409 66 ntBASIC0.88□□□□□ -2.27
MSX2P35548 RNU6-274P-201ENST00000459566 107 ntBASIC0.88□□□□□ -2.27
MSX2P35548 RNA5SP94-201ENST00000516917 108 ntBASIC0.88□□□□□ -2.27
MSX2P35548 MIR3675-201ENST00000583661 73 ntBASIC0.88□□□□□ -2.27
MSX2P35548 MIR6788-201ENST00000618842 66 ntBASIC0.88□□□□□ -2.27
MSX2P35548 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.88□□□□□ -2.27
MSX2P35548 RNU1-141P-201ENST00000364623 158 ntBASIC0.87□□□□□ -2.27
MSX2P35548 RNU6V-201ENST00000384105 107 ntBASIC0.87□□□□□ -2.27
MSX2P35548 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
MSX2P35548 RNU6-634P-201ENST00000459134 106 ntBASIC0.87□□□□□ -2.27
MSX2P35548 RPL39P28-201ENST00000465655 155 ntBASIC0.87□□□□□ -2.27
MSX2P35548 RNU6-752P-201ENST00000516376 102 ntBASIC0.87□□□□□ -2.27
MSX2P35548 NAMPTP3-201ENST00000569273 224 ntBASIC0.87□□□□□ -2.27
MSX2P35548 MIR151B-201ENST00000584249 96 ntBASIC0.87□□□□□ -2.27
MSX2P35548 Y_RNA.540-201ENST00000384638 111 ntBASIC0.86□□□□□ -2.27
MSX2P35548 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.86□□□□□ -2.27
MSX2P35548 RNA5SP222-201ENST00000411039 105 ntBASIC0.86□□□□□ -2.27
MSX2P35548 RNA5SP484-201ENST00000458857 111 ntBASIC0.86□□□□□ -2.27
MSX2P35548 SNORD42B-201ENST00000458893 67 ntBASIC0.86□□□□□ -2.27
MSX2P35548 RNA5SP227-201ENST00000516184 113 ntBASIC0.86□□□□□ -2.27
MSX2P35548 MIR6767-201ENST00000637302 66 ntBASIC0.86□□□□□ -2.27
MSX2P35548 RNY1P8-201ENST00000383970 114 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms