Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 RNA5SP205-201ENST00000364653 136 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 SNORD114-29-201ENST00000364819 70 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 SNORD50.2-201ENST00000365465 70 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 RNU7-85P-201ENST00000458851 63 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 AL513043.2-201ENST00000573941 143 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 MIR5009-201ENST00000578736 100 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 U6.95-201ENST00000636931 70 ntBASIC-0.33□□□□□ -2.46
PGK1P00558 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.34□□□□□ -2.46
PGK1P00558 MIR3133-201ENST00000583157 78 ntBASIC-0.34□□□□□ -2.46
PGK1P00558 SNORD116-14-201ENST00000383894 92 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 SNORD116-17-201ENST00000383929 92 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 SNORD116-15-201ENST00000384445 92 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 SNORD116-19-201ENST00000384729 92 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 MIR451A-201ENST00000385059 72 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 MIR652-201ENST00000385278 98 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 RNA5SP451-201ENST00000410588 110 ntBASIC-0.35□□□□□ -2.47
PGK1P00558 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 RNU6-774P-201ENST00000363238 107 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 RNU6-54P-201ENST00000365563 107 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 MIR548A3-201ENST00000385297 97 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 RPS29P8-201ENST00000445109 171 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 MIR3668-201ENST00000582138 75 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 MIR3666-201ENST00000607845 111 ntBASIC-0.36□□□□□ -2.47
PGK1P00558 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 SNORD95.1-201ENST00000364099 68 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 SNORA49-201ENST00000386157 136 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 MT-TR-201ENST00000387439 65 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 MIR4439-201ENST00000583746 80 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 MIR548Z-201ENST00000584743 97 ntBASIC-0.37□□□□□ -2.47
PGK1P00558 SNORD114-11-201ENST00000363738 75 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 SNORD45B-201ENST00000364617 72 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 RNU6-132P-201ENST00000383863 107 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 RNA5SP300-201ENST00000391197 107 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 AC103810.7-201ENST00000607821 91 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 AL590491.3-201ENST00000610731 82 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 AL627230.5-201ENST00000619807 58 ntBASIC-0.38□□□□□ -2.47
PGK1P00558 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 MIR216B-201ENST00000390186 82 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 RNU6-320P-201ENST00000516511 106 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 MIR4777-201ENST00000583710 86 ntBASIC-0.39□□□□□ -2.47
PGK1P00558 MIR20A-201ENST00000362279 71 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 RNU6-704P-201ENST00000364162 103 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 RNU6-813P-201ENST00000384691 107 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 MIR224-201ENST00000384889 81 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 SNORA19.1-201ENST00000410656 129 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 AC244090.1-201ENST00000441884 93 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 RNU6-65P-201ENST00000516332 98 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 AC145423.2-201ENST00000610631 239 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.4□□□□□ -2.47
PGK1P00558 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.4□□□□□ -2.47
PGK1P00558 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.4□□□□□ -2.47
PGK1P00558 MIR582-201ENST00000365731 98 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 RNU6-880P-201ENST00000384526 107 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 RNU6-644P-201ENST00000391155 98 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 RNU6-795P-201ENST00000516323 103 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 RNA5SP67-201ENST00000516422 131 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 AC012531.4-201ENST00000616509 177 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 MIR4788-201ENST00000639104 80 ntBASIC-0.41□□□□□ -2.48
PGK1P00558 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.41□□□□□ -2.48
PGK1P00558 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 RNU6-746P-201ENST00000384112 109 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 SNORD42B-201ENST00000458893 67 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 AC097510.1-201ENST00000510945 133 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 RNU6-762P-201ENST00000517107 102 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 MIR4536-1-201ENST00000583537 88 ntBASIC-0.42□□□□□ -2.48
PGK1P00558 RNA5SP275-201ENST00000363936 118 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 MIR9-2-201ENST00000384838 87 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 U3.27-201ENST00000391237 200 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 MIR548E-201ENST00000408287 88 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 AC096531.1-201ENST00000419107 107 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 MIR3064-201ENST00000581130 66 ntBASIC-0.43□□□□□ -2.48
PGK1P00558 SNORD116-21-201ENST00000384507 92 ntBASIC-0.44□□□□□ -2.48
PGK1P00558 RNU6-455P-201ENST00000384681 107 ntBASIC-0.44□□□□□ -2.48
PGK1P00558 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
PGK1P00558 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
PGK1P00558 SNORD4B-201ENST00000459083 72 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 FGF7P7-201ENST00000514120 227 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 RNU6-904P-201ENST00000516206 101 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 AC104996.3-201ENST00000590718 94 ntBASIC-0.45□□□□□ -2.48
PGK1P00558 RNU4-36P-201ENST00000364294 144 ntBASIC-0.46□□□□□ -2.48
PGK1P00558 SNORA24B-201ENST00000384176 131 ntBASIC-0.46□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms