Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MIR2113-201ENST00000459007 91 ntBASIC1.49□□□□□ -2.17
AP4E1Q9UPM8 AC097510.1-201ENST00000510945 133 ntBASIC1.49□□□□□ -2.17
AP4E1Q9UPM8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.49□□□□□ -2.17
AP4E1Q9UPM8 SNORD115-24-201ENST00000363528 82 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 SNORA17.3-201ENST00000391159 129 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 RNU6-1052P-201ENST00000411398 104 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 RNU7-13P-201ENST00000516413 62 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 RNU6-719P-201ENST00000516671 104 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 MIR548AG2-201ENST00000581228 64 ntBASIC1.48□□□□□ -2.17
AP4E1Q9UPM8 MIR378A-201ENST00000362177 66 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 RNA5SP327-201ENST00000362494 101 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 RNU6-1126P-201ENST00000384002 107 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 SNORA25-201ENST00000384384 134 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 MIR222-201ENST00000384992 110 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 AC108667.1-201ENST00000428618 249 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 snoU13.31-201ENST00000607291 104 ntBASIC1.47□□□□□ -2.17
AP4E1Q9UPM8 Y_RNA.258-201ENST00000364613 105 ntBASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 RNU6-590P-201ENST00000365039 107 ntBASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 RNU6-1241P-201ENST00000384536 107 ntBASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 U3.27-201ENST00000391237 200 ntBASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 RNU6-955P-201ENST00000410497 104 ntBASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.46□□□□□ -2.18
AP4E1Q9UPM8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 RNU6-681P-201ENST00000364012 104 ntBASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 RNA5SP61-201ENST00000516453 100 ntBASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 RNU6-1057P-201ENST00000517162 102 ntBASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 MIR3920-201ENST00000581751 86 ntBASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.45□□□□□ -2.18
AP4E1Q9UPM8 SNORD26-201ENST00000384147 75 ntBASIC1.44□□□□□ -2.18
AP4E1Q9UPM8 RNU6-1177P-201ENST00000391058 104 ntBASIC1.44□□□□□ -2.18
AP4E1Q9UPM8 AC002350.1-201ENST00000490759 375 ntBASIC1.44□□□□□ -2.18
AP4E1Q9UPM8 RNU1-123P-201ENST00000458950 160 ntBASIC1.43□□□□□ -2.18
AP4E1Q9UPM8 RNU7-104P-201ENST00000459398 79 ntBASIC1.43□□□□□ -2.18
AP4E1Q9UPM8 AL136317.1-201ENST00000612653 226 ntBASIC1.43□□□□□ -2.18
AP4E1Q9UPM8 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.43□□□□□ -2.18
AP4E1Q9UPM8 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.43□□□□□ -2.18
AP4E1Q9UPM8 MIR19B1-201ENST00000384829 87 ntBASIC1.42□□□□□ -2.18
AP4E1Q9UPM8 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
AP4E1Q9UPM8 RNU6-1110P-201ENST00000516462 101 ntBASIC1.42□□□□□ -2.18
AP4E1Q9UPM8 RNU1-92P-201ENST00000517017 135 ntBASIC1.42□□□□□ -2.18
AP4E1Q9UPM8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
AP4E1Q9UPM8 SNORD115-31-201ENST00000365318 82 ntBASIC1.41□□□□□ -2.18
AP4E1Q9UPM8 RNU6-540P-201ENST00000384622 101 ntBASIC1.41□□□□□ -2.18
AP4E1Q9UPM8 RNU4-62P-201ENST00000410125 130 ntBASIC1.41□□□□□ -2.18
AP4E1Q9UPM8 RNU6-382P-201ENST00000365181 106 ntBASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 MIR154-201ENST00000385243 84 ntBASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 MIR644A-201ENST00000385262 94 ntBASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 SNORD89-201ENST00000390981 114 ntBASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 MIR3675-201ENST00000583661 73 ntBASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
AP4E1Q9UPM8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 MIR617-201ENST00000385030 97 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 MIR519E-201ENST00000385075 84 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 SNORD105-201ENST00000386910 85 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 RPS29P23-201ENST00000458635 123 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 RNU6-135P-201ENST00000516769 101 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
AP4E1Q9UPM8 Y_RNA.226-201ENST00000364337 114 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 MIR758-201ENST00000390227 88 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 MIR1287-201ENST00000408492 90 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 FABP5P4-201ENST00000437203 171 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 MIR4639-201ENST00000584938 69 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 MIR4773-1-201ENST00000637203 78 ntBASIC1.38□□□□□ -2.19
AP4E1Q9UPM8 RNA5SP117-201ENST00000365294 118 ntBASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 Y_RNA.386-201ENST00000383913 105 ntBASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 RNU7-95P-201ENST00000459222 64 ntBASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 U7.7-201ENST00000459276 60 ntBASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 MIR4421-201ENST00000578133 69 ntBASIC1.37□□□□□ -2.19
AP4E1Q9UPM8 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 RNU6-649P-201ENST00000384463 107 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 SNORD28-201ENST00000384706 75 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 SNORD75.2-201ENST00000408784 58 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 RNU6-321P-201ENST00000410912 106 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 RNU6-274P-201ENST00000459566 107 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 SNORD124-201ENST00000459577 104 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 TRMT112P2-201ENST00000512910 132 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 RNU6-752P-201ENST00000516376 102 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 AC068338.1-201ENST00000565567 176 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 AL078603.1-201ENST00000603824 313 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 AC067863.3-201ENST00000624172 122 ntBASIC1.36□□□□□ -2.19
AP4E1Q9UPM8 SNORA7.1-201ENST00000363750 139 ntBASIC1.35□□□□□ -2.19
AP4E1Q9UPM8 SNORD18A-201ENST00000363753 72 ntBASIC1.35□□□□□ -2.19
AP4E1Q9UPM8 SNORD41.1-201ENST00000391000 69 ntBASIC1.35□□□□□ -2.19
AP4E1Q9UPM8 MIR548O2-201ENST00000616090 70 ntBASIC1.35□□□□□ -2.19
AP4E1Q9UPM8 AC244669.1-204ENST00000621564 178 ntBASIC1.35□□□□□ -2.19
AP4E1Q9UPM8 RNU6-1335P-201ENST00000365426 107 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 MIR200A-201ENST00000384875 90 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 MIR573-201ENST00000384964 99 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 MIR216B-201ENST00000390186 82 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 SNORD30.1-201ENST00000391309 70 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 AP1B1P2-201ENST00000416196 106 ntBASIC1.34□□□□□ -2.19
AP4E1Q9UPM8 RNU7-24P-201ENST00000458867 62 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 225.8 ms