Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 U7.7-201ENST00000459276 60 ntBASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIMD1Q9UGP4 RNU6-469P-201ENST00000516253 101 ntBASIC1.84□□□□□ -2.11
LIMD1Q9UGP4 RNU6-1015P-201ENST00000517121 99 ntBASIC1.84□□□□□ -2.11
LIMD1Q9UGP4 ZNF209P-201ENST00000593450 2304 ntBASIC1.84□□□□□ -2.12
LIMD1Q9UGP4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 MIR200A-201ENST00000384875 90 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 RNU6-587P-201ENST00000391282 106 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 AC002350.1-201ENST00000490759 375 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 U6.81-201ENST00000612550 106 ntBASIC1.83□□□□□ -2.12
LIMD1Q9UGP4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNA5SP327-201ENST00000362494 101 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 Y_RNA.224-201ENST00000364308 111 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-154P-201ENST00000384306 106 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR19B1-201ENST00000384829 87 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR2113-201ENST00000459007 91 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-719P-201ENST00000516671 104 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
LIMD1Q9UGP4 RNU6-590P-201ENST00000365039 107 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 SNORD105-201ENST00000386910 85 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 RNU6-634P-201ENST00000459134 106 ntBASIC1.81□□□□□ -2.12
LIMD1Q9UGP4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 SNORD89-201ENST00000390981 114 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU7-74P-201ENST00000459104 62 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU6-687P-201ENST00000516443 89 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 RNU7-161P-201ENST00000517289 62 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 AC067863.3-201ENST00000624172 122 ntBASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.8□□□□□ -2.12
LIMD1Q9UGP4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 RNU7-104P-201ENST00000459398 79 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 snoU13.18-201ENST00000459483 104 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 RNU6-539P-201ENST00000516665 103 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 MIR4639-201ENST00000584938 69 ntBASIC1.79□□□□□ -2.12
LIMD1Q9UGP4 SNORA16.1-201ENST00000364597 132 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR617-201ENST00000385030 97 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR3920-201ENST00000581751 86 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR3675-201ENST00000583661 73 ntBASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LIMD1Q9UGP4 MIR154-201ENST00000385243 84 ntBASIC1.77□□□□□ -2.13
LIMD1Q9UGP4 RNU6-752P-201ENST00000516376 102 ntBASIC1.77□□□□□ -2.13
LIMD1Q9UGP4 RNU6-824P-201ENST00000363724 104 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 RNU1-42P-201ENST00000364033 160 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 MIR1276-201ENST00000408707 83 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 RNU6-274P-201ENST00000459566 107 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 AC025627.3-201ENST00000582078 182 ntBASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LIMD1Q9UGP4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 RNU6-1241P-201ENST00000384536 107 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 SNORD53B-201ENST00000577887 78 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 MIR6504-201ENST00000613520 61 ntBASIC1.75□□□□□ -2.13
LIMD1Q9UGP4 MIR4419B-201ENST00000577260 68 ntBASIC1.74□□□□□ -2.13
LIMD1Q9UGP4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 RNU6-392P-201ENST00000364926 101 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 SNORD26-201ENST00000384147 75 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 MIR664A-201ENST00000626086 82 ntBASIC1.73□□□□□ -2.13
LIMD1Q9UGP4 RNU1-123P-201ENST00000458950 160 ntBASIC1.72□□□□□ -2.13
LIMD1Q9UGP4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.72□□□□□ -2.13
LIMD1Q9UGP4 SNORA7.1-201ENST00000363750 139 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 SNORD28-201ENST00000384706 75 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR644A-201ENST00000385262 94 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR3122-201ENST00000577243 73 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR548AG2-201ENST00000581228 64 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AL078603.1-201ENST00000603824 313 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 AC012493.3-201ENST00000604494 112 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR8053-201ENST00000613344 75 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 MIR4773-1-201ENST00000637203 78 ntBASIC1.71□□□□□ -2.14
LIMD1Q9UGP4 RNU6-330P-201ENST00000363015 107 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 MIR573-201ENST00000384964 99 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 RNU7-24P-201ENST00000458867 62 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 AC244669.1-204ENST00000621564 178 ntBASIC1.7□□□□□ -2.14
LIMD1Q9UGP4 SNORD114-24-201ENST00000365029 72 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 RNU6-649P-201ENST00000384463 107 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 MIR548L-201ENST00000408303 86 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 SNORD75.2-201ENST00000408784 58 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 RPS29P23-201ENST00000458635 123 ntBASIC1.69□□□□□ -2.14
LIMD1Q9UGP4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORA25.8-201ENST00000364831 128 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORD48-201ENST00000364953 64 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 MIR519E-201ENST00000385075 84 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORD41.1-201ENST00000391000 69 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 SNORA67.6-201ENST00000391093 99 ntBASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LIMD1Q9UGP4 RNU6-382P-201ENST00000365181 106 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 RNU1-92P-201ENST00000517017 135 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 MIR4452-201ENST00000583004 71 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 MIR548O2-201ENST00000616090 70 ntBASIC1.67□□□□□ -2.14
LIMD1Q9UGP4 SNORD18A-201ENST00000363753 72 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 RNU1-124P-201ENST00000363861 145 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 RNU6-42P-201ENST00000384165 107 ntBASIC1.66□□□□□ -2.14
LIMD1Q9UGP4 SNORD124-201ENST00000459577 104 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms