Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 MIR147A-201ENST00000385079 72 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 RNU6-493P-201ENST00000391321 108 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 MIR3646-201ENST00000578301 84 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 MIR369-201ENST00000362155 70 ntBASIC-1.38□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.38□□□□□ -2.63
SCN3AQ9NY46 RNU6-521P-201ENST00000516663 105 ntBASIC-1.38□□□□□ -2.63
SCN3AQ9NY46 RNU6-508P-201ENST00000363231 103 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 SNORD38.1-201ENST00000363863 68 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 SNORA26.4-201ENST00000391188 123 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 AL445584.3-201ENST00000617173 78 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 RNU6-208P-201ENST00000362431 107 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 RNU6-876P-201ENST00000391295 104 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 MIR1255B1-201ENST00000636325 63 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 MIR6844-201ENST00000637122 62 ntBASIC-1.39□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.276-201ENST00000364732 109 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 RNU6-479P-201ENST00000516348 105 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 MIR4643-201ENST00000577473 78 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 U2.14-201ENST00000615943 113 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 SNORA63.6-201ENST00000364921 119 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 RNU6-983P-201ENST00000516004 103 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 RNU6-732P-201ENST00000516033 103 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.4□□□□□ -2.63
SCN3AQ9NY46 RNU6-363P-201ENST00000362895 105 ntBASIC-1.41□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.41□□□□□ -2.64
SCN3AQ9NY46 RNU7-134P-201ENST00000458997 64 ntBASIC-1.41□□□□□ -2.64
SCN3AQ9NY46 RNU6-762P-201ENST00000517107 102 ntBASIC-1.41□□□□□ -2.64
SCN3AQ9NY46 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.41□□□□□ -2.64
SCN3AQ9NY46 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 MTND3P22-201ENST00000510932 243 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 AL365265.1-201ENST00000621045 234 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 RNU6-616P-201ENST00000384353 107 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.579-201ENST00000390939 94 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 MIR8485-201ENST00000401372 91 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 RNU6-588P-201ENST00000410281 105 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 SNORD42B-201ENST00000458893 67 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 MIR6818-201ENST00000621576 65 ntBASIC-1.42□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 RNU6-880P-201ENST00000384526 107 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 MIR29B1-201ENST00000385015 81 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 AC022028.1-201ENST00000412054 408 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 AC108081.1-201ENST00000604358 221 ntBASIC-1.43□□□□□ -2.64
SCN3AQ9NY46 SNORA63.2-201ENST00000362603 126 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 RNY3P1-201ENST00000365085 102 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 MIR759-201ENST00000390224 91 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 MIR889-201ENST00000401280 79 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 MIR3121-201ENST00000579680 77 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 RNU6-540P-201ENST00000384622 101 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 MTATP6P21-201ENST00000440681 189 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 MIR6739-201ENST00000622461 75 ntBASIC-1.44□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 MIR3163-201ENST00000581592 73 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 MT-TW-201ENST00000387382 68 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 MIR548G-201ENST00000408442 89 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 MTATP6P29-201ENST00000415057 132 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 RNU7-154P-201ENST00000516194 62 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 RNU6-65P-201ENST00000516332 98 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 RNY3P16-201ENST00000516338 101 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 AC090617.8-201ENST00000623339 167 ntBASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.45□□□□□ -2.64
SCN3AQ9NY46 SNORD75.2-201ENST00000408784 58 ntBASIC-1.46□□□□□ -2.64
SCN3AQ9NY46 MIR4490-201ENST00000582647 84 ntBASIC-1.46□□□□□ -2.64
SCN3AQ9NY46 RNU6-924P-201ENST00000362926 108 ntBASIC-1.47□□□□□ -2.64
SCN3AQ9NY46 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.47□□□□□ -2.64
SCN3AQ9NY46 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.47□□□□□ -2.64
SCN3AQ9NY46 SNORA75.5-201ENST00000391291 81 ntBASIC-1.47□□□□□ -2.64
SCN3AQ9NY46 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.47□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.47□□□□□ -2.65
SCN3AQ9NY46 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.47□□□□□ -2.65
SCN3AQ9NY46 RNU6-875P-201ENST00000516488 106 ntBASIC-1.47□□□□□ -2.65
SCN3AQ9NY46 U6.106-201ENST00000636360 105 ntBASIC-1.47□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.48□□□□□ -2.65
SCN3AQ9NY46 RNU6-713P-201ENST00000384761 107 ntBASIC-1.48□□□□□ -2.65
SCN3AQ9NY46 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.48□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.48□□□□□ -2.65
SCN3AQ9NY46 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-1.48□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.277-201ENST00000364754 102 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.49□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 186.1 ms