Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
NPAS3Q8IXF0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC2.07□□□□□ -2.08
NPAS3Q8IXF0 RNU7-40P-201ENST00000516397 64 ntBASIC2.07□□□□□ -2.08
NPAS3Q8IXF0 RNU6-231P-201ENST00000517122 103 ntBASIC2.07□□□□□ -2.08
NPAS3Q8IXF0 AL157834.3-201ENST00000615543 103 ntBASIC2.07□□□□□ -2.08
NPAS3Q8IXF0 Y_RNA.32-201ENST00000362589 110 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 RNA5SP403-201ENST00000363598 108 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 SNORD113.3-201ENST00000364630 78 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 AC021146.9-201ENST00000512503 156 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 SNORA31.14-201ENST00000516728 116 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 AC019176.1-201ENST00000518519 225 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 MIR5002-201ENST00000584713 97 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 U2.7-201ENST00000619197 100 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 AC027335.2-201ENST00000624030 375 ntBASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
NPAS3Q8IXF0 RNA5SP37-201ENST00000365420 130 ntBASIC2.05□□□□□ -2.08
NPAS3Q8IXF0 MIR938-201ENST00000401216 83 ntBASIC2.05□□□□□ -2.08
NPAS3Q8IXF0 MIR6840-201ENST00000611937 71 ntBASIC2.05□□□□□ -2.08
NPAS3Q8IXF0 RNA5SP276-201ENST00000362580 94 ntBASIC2.04□□□□□ -2.08
NPAS3Q8IXF0 MIR521-2-201ENST00000384818 87 ntBASIC2.04□□□□□ -2.08
NPAS3Q8IXF0 RPS26P5-201ENST00000418544 335 ntBASIC2.04□□□□□ -2.08
NPAS3Q8IXF0 AC036111.3-201ENST00000526389 112 ntBASIC2.04□□□□□ -2.08
NPAS3Q8IXF0 AC023827.1-201ENST00000569247 97 ntBASIC2.04□□□□□ -2.08
NPAS3Q8IXF0 Y_RNA.118-201ENST00000363300 101 ntBASIC2.03□□□□□ -2.08
NPAS3Q8IXF0 RNU1-123P-201ENST00000458950 160 ntBASIC2.03□□□□□ -2.08
NPAS3Q8IXF0 MIR8063-201ENST00000621930 81 ntBASIC2.03□□□□□ -2.08
NPAS3Q8IXF0 Y_RNA.325-201ENST00000365171 122 ntBASIC2.02□□□□□ -2.09
NPAS3Q8IXF0 AC079804.2-201ENST00000490376 200 ntBASIC2.02□□□□□ -2.09
NPAS3Q8IXF0 MIR3664-201ENST00000579074 99 ntBASIC2.02□□□□□ -2.09
NPAS3Q8IXF0 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 SNORA9.1-201ENST00000362412 131 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 SNORA17.3-201ENST00000391159 129 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 MIR1287-201ENST00000408492 90 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 AC003989.2-201ENST00000440224 169 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 RNU6-717P-201ENST00000459076 104 ntBASIC2.01□□□□□ -2.09
NPAS3Q8IXF0 RNU4-52P-201ENST00000384209 138 ntBASIC2□□□□□ -2.09
NPAS3Q8IXF0 RNU6-1246P-201ENST00000391064 107 ntBASIC2□□□□□ -2.09
NPAS3Q8IXF0 AC108667.1-201ENST00000428618 249 ntBASIC2□□□□□ -2.09
NPAS3Q8IXF0 SNORA40.16-201ENST00000517238 121 ntBASIC2□□□□□ -2.09
NPAS3Q8IXF0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2□□□□□ -2.09
NPAS3Q8IXF0 AC067863.3-201ENST00000624172 122 ntBASIC2□□□□□ -2.09
NPAS3Q8IXF0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
NPAS3Q8IXF0 SNORA3A-201ENST00000364113 130 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 SNORA33.1-201ENST00000364957 130 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 RNU7-193P-201ENST00000516723 65 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 RNU1-40P-201ENST00000516816 164 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 RNU1-97P-201ENST00000516872 164 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 MIR4460-201ENST00000577862 86 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 uc_338.16-201ENST00000621804 95 ntBASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
NPAS3Q8IXF0 Y_RNA.246-201ENST00000364495 108 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 RNA5SP160-201ENST00000364866 120 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 RNU6-724P-201ENST00000390958 105 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 HMGN2P38-201ENST00000423806 265 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 RNU5B-6P-201ENST00000516765 68 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 SNORA31.25-201ENST00000517242 134 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 MIR4498-201ENST00000577599 66 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 MIR4529-201ENST00000578110 78 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 SNORA77B-201ENST00000578179 125 ntBASIC1.98□□□□□ -2.09
NPAS3Q8IXF0 Y_RNA.125-201ENST00000363371 111 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 RNU1-119P-201ENST00000391122 165 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 MIR4781-201ENST00000585250 76 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 AL136317.1-201ENST00000612653 226 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 AL773524.1-201ENST00000614065 229 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 AP000553.5-201ENST00000641933 54 ntBASIC1.97□□□□□ -2.09
NPAS3Q8IXF0 Y_RNA.250-201ENST00000364542 110 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 RNA5SP190-201ENST00000365222 118 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 MIR9-3-201ENST00000385084 90 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 MT-TY-201ENST00000387409 66 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 SNORA75.2-201ENST00000391138 150 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 SNORA75.3-201ENST00000391231 150 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 RNA5SP338-201ENST00000410495 85 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 SNORD13-201ENST00000459299 104 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 MIR548X-201ENST00000580069 75 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 MIR4804-201ENST00000581683 73 ntBASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.96□□□□□ -2.1
NPAS3Q8IXF0 RNU6ATAC14P-201ENST00000516218 91 ntBASIC1.95□□□□□ -2.1
NPAS3Q8IXF0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.95□□□□□ -2.1
NPAS3Q8IXF0 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
NPAS3Q8IXF0 AL359851.1-201ENST00000569460 4997 ntBASIC1.95□□□□□ -2.1
NPAS3Q8IXF0 MIR100-201ENST00000385259 80 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 SNORD111-201ENST00000408139 94 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 MIR548L-201ENST00000408303 86 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 RNU6-994P-201ENST00000410507 111 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 RNU7-56P-201ENST00000458744 62 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 AC048334.1-201ENST00000477975 159 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 RNU6-1053P-201ENST00000515930 101 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 SNORA25.15-201ENST00000516487 89 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 MIR7110-201ENST00000612638 86 ntBASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
NPAS3Q8IXF0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 257.1 ms