Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORA24B-201ENST00000384176 131 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 SNORA80D-201ENST00000384488 135 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 RNU6-535P-201ENST00000384722 107 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 MIR938-201ENST00000401216 83 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 Y_RNA.596-201ENST00000410462 109 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 AC244505.6-201ENST00000452829 130 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 RNU7-56P-201ENST00000458744 62 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 RNU6-807P-201ENST00000516805 107 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 YWHAEP2-201ENST00000580066 112 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 YWHAEP3-201ENST00000582767 121 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 AC027335.2-201ENST00000624030 375 ntBASIC1.28□□□□□ -2.2
USP39Q53GS9 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.28□□□□□ -2.2
USP39Q53GS9 RNU6-70P-201ENST00000516438 60 ntBASIC1.27□□□□□ -2.21
USP39Q53GS9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
USP39Q53GS9 RNU6-330P-201ENST00000363015 107 ntBASIC1.26□□□□□ -2.21
USP39Q53GS9 RNU1-93P-201ENST00000364704 169 ntBASIC1.26□□□□□ -2.21
USP39Q53GS9 RNU6-364P-201ENST00000384387 107 ntBASIC1.26□□□□□ -2.21
USP39Q53GS9 RNU5F-1-201ENST00000362507 117 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 Y_RNA.36-201ENST00000362602 112 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 RNU6-340P-201ENST00000364005 107 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 RNU6-935P-201ENST00000410371 100 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.25□□□□□ -2.21
USP39Q53GS9 MIR2113-201ENST00000459007 91 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 RNU7-90P-201ENST00000459216 62 ntBASIC1.25□□□□□ -2.21
USP39Q53GS9 MIR7-2-201ENST00000384970 110 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
USP39Q53GS9 MIR942-201ENST00000401111 86 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 RNU6-634P-201ENST00000459134 106 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 Y_RNA.681-201ENST00000516445 113 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 RNU6-539P-201ENST00000516665 103 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 uc_338.16-201ENST00000621804 95 ntBASIC1.24□□□□□ -2.21
USP39Q53GS9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
USP39Q53GS9 Y_RNA.32-201ENST00000362589 110 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 SNORD114-27-201ENST00000363766 70 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 RNY4P3-201ENST00000365254 95 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 Y_RNA.371-201ENST00000365591 113 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 RNU6-154P-201ENST00000384306 106 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 MIR520E-201ENST00000384867 87 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 Y_RNA.606-201ENST00000410579 103 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 RNU6-977P-201ENST00000516411 103 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 SNORA31.14-201ENST00000516728 116 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 MIR4295-201ENST00000585286 85 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 AC022709.1-201ENST00000615967 87 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 MIR6515-201ENST00000619843 57 ntBASIC1.23□□□□□ -2.21
USP39Q53GS9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
USP39Q53GS9 RNA5SP327-201ENST00000362494 101 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-824P-201ENST00000363724 104 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 MIR451A-201ENST00000385059 72 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-587P-201ENST00000391282 106 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 MIR1827-201ENST00000408549 66 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-994P-201ENST00000410507 111 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-1052P-201ENST00000411398 104 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RPS29P1-201ENST00000465274 159 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 AC087343.1-201ENST00000477341 475 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-287P-201ENST00000516230 98 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-719P-201ENST00000516671 104 ntBASIC1.22□□□□□ -2.21
USP39Q53GS9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.22□□□□□ -2.21
USP39Q53GS9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
USP39Q53GS9 RNU6-590P-201ENST00000365039 107 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 RNU6-1241P-201ENST00000384536 107 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 MIR100-201ENST00000385259 80 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 RNU1-119P-201ENST00000391122 165 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 RNU2-59P-201ENST00000410482 191 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 RNU6-1223P-201ENST00000517124 104 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 U6.81-201ENST00000612550 106 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.21□□□□□ -2.22
USP39Q53GS9 MIR1-1-201ENST00000362147 71 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 RNA5SP403-201ENST00000363598 108 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 RNU6-540P-201ENST00000384622 101 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 MIR520F-201ENST00000384824 87 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 AC097510.1-201ENST00000510945 133 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 RNU6-871P-201ENST00000516122 100 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 RNA5SP480-201ENST00000516840 109 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 SNORA70.22-201ENST00000517160 124 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 MIR548AG2-201ENST00000581228 64 ntBASIC1.2□□□□□ -2.22
USP39Q53GS9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.19□□□□□ -2.22
USP39Q53GS9 SNORD115-31-201ENST00000365318 82 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 Y_RNA.540-201ENST00000384638 111 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 MIR222-201ENST00000384992 110 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 SNORD12-201ENST00000391002 90 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 AC002429.1-201ENST00000437672 148 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 RNU7-161P-201ENST00000517289 62 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 MIR151B-201ENST00000584249 96 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 MIR6788-201ENST00000618842 66 ntBASIC1.19□□□□□ -2.22
USP39Q53GS9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
USP39Q53GS9 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
USP39Q53GS9 Y_RNA.258-201ENST00000364613 105 ntBASIC1.18□□□□□ -2.22
USP39Q53GS9 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
USP39Q53GS9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.18□□□□□ -2.22
USP39Q53GS9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.18□□□□□ -2.22
USP39Q53GS9 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
USP39Q53GS9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
USP39Q53GS9 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
USP39Q53GS9 SNORD115-44-201ENST00000365391 82 ntBASIC1.17□□□□□ -2.22
USP39Q53GS9 Y_RNA.386-201ENST00000383913 105 ntBASIC1.17□□□□□ -2.22
USP39Q53GS9 SNORA8.1-201ENST00000384250 140 ntBASIC1.17□□□□□ -2.22
USP39Q53GS9 U3.27-201ENST00000391237 200 ntBASIC1.17□□□□□ -2.22
USP39Q53GS9 MIR3920-201ENST00000581751 86 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms