Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Y_RNA.788-201ENST00000622394 112 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 RNU1-78P-201ENST00000391248 165 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 RNU6-165P-201ENST00000517170 99 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 RNU7-156P-201ENST00000517214 74 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 AC036111.3-201ENST00000526389 112 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 AL512310.8-201ENST00000550183 120 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 MIR4698-201ENST00000577795 80 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 MIR3198-2-201ENST00000577868 80 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 MIR6857-201ENST00000613267 93 ntBASIC1.18□□□□□ -2.22
COL3A1P02461 Y_RNA.42-201ENST00000362660 108 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 RNU6-681P-201ENST00000364012 104 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
COL3A1P02461 SNORD101-201ENST00000384027 73 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 Y_RNA.433-201ENST00000384089 102 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 MIR520H-201ENST00000385126 88 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 Y_RNA.596-201ENST00000410462 109 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 snoU13.17-201ENST00000458802 104 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 AC048334.1-201ENST00000477975 159 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 RNU6-1015P-201ENST00000517121 99 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 MIR4771-2-201ENST00000577758 74 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 MIR4696-201ENST00000581431 70 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 MIR4771-1-201ENST00000582617 74 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 MIR4484-201ENST00000582855 83 ntBASIC1.17□□□□□ -2.22
COL3A1P02461 RNU6-364P-201ENST00000384387 107 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 RPS26P5-201ENST00000418544 335 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 AC074348.1-201ENST00000426503 132 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 AC097635.1-201ENST00000450678 155 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 RN7SKP88-201ENST00000516847 250 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 7SK.8-201ENST00000612110 250 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 7SK.11-201ENST00000615477 250 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 7SK.13-201ENST00000622040 250 ntBASIC1.16□□□□□ -2.22
COL3A1P02461 Y_RNA.207-201ENST00000364142 106 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 Y_RNA.371-201ENST00000365591 113 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 SNORA8.1-201ENST00000384250 140 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 MIR599-201ENST00000385069 95 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 RNU6-539P-201ENST00000516665 103 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 MIR4422-201ENST00000581938 83 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 AC106800.4-201ENST00000614905 153 ntBASIC1.15□□□□□ -2.23
COL3A1P02461 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
COL3A1P02461 Y_RNA.258-201ENST00000364613 105 ntBASIC1.14□□□□□ -2.23
COL3A1P02461 RNU6-535P-201ENST00000384722 107 ntBASIC1.14□□□□□ -2.23
COL3A1P02461 AL606490.4-201ENST00000423117 127 ntBASIC1.14□□□□□ -2.23
COL3A1P02461 RNA5SP476-201ENST00000516613 103 ntBASIC1.14□□□□□ -2.23
COL3A1P02461 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.14□□□□□ -2.23
COL3A1P02461 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.14□□□□□ -2.23
COL3A1P02461 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.14□□□□□ -2.23
COL3A1P02461 Y_RNA.532-201ENST00000384590 113 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 SNORD90-201ENST00000391145 111 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 RNU6-587P-201ENST00000391282 106 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 MIR938-201ENST00000401216 83 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 RNU6-687P-201ENST00000516443 89 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 RNA5SP121-201ENST00000516537 101 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 AC027335.2-201ENST00000624030 375 ntBASIC1.13□□□□□ -2.23
COL3A1P02461 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.13□□□□□ -2.23
COL3A1P02461 RNU6-340P-201ENST00000364005 107 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 SNORA80D-201ENST00000384488 135 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNU2-59P-201ENST00000410482 191 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.12□□□□□ -2.23
COL3A1P02461 RNU6-634P-201ENST00000459134 106 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 SNORA31.2-201ENST00000516019 134 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNA5SP330-201ENST00000517096 96 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNU6-1057P-201ENST00000517162 102 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MIR1273G-201ENST00000577677 100 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MIR4714-201ENST00000580728 77 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MIR4676-201ENST00000583078 72 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MTRNR2L2-201ENST00000604882 87 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNU6-291P-201ENST00000384720 107 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MIR193B-201ENST00000384907 83 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 MIR154-201ENST00000385243 84 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
COL3A1P02461 SNORA75.2-201ENST00000391138 150 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 SNORA75.3-201ENST00000391231 150 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 RNU7-90P-201ENST00000459216 62 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 HAR1A.1-201ENST00000459583 118 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 AC097510.1-201ENST00000510945 133 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 AC008834.1-201ENST00000511612 175 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 AC023827.1-201ENST00000569247 97 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 U6.100-201ENST00000636230 99 ntBASIC1.12□□□□□ -2.23
COL3A1P02461 Y_RNA.606-201ENST00000410579 103 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 RNU6-1052P-201ENST00000411398 104 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 RNU7-21P-201ENST00000459430 62 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 AC125388.1-201ENST00000459631 156 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 RNU6-977P-201ENST00000516411 103 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 RNU6-719P-201ENST00000516671 104 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 MIR3675-201ENST00000583661 73 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 MIR3140-201ENST00000583685 90 ntBASIC1.11□□□□□ -2.23
COL3A1P02461 MIR1-1-201ENST00000362147 71 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 RNU6-649P-201ENST00000384463 107 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 RNU1-119P-201ENST00000391122 165 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 U3.27-201ENST00000391237 200 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 MIR934-201ENST00000401241 83 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 RNU6-935P-201ENST00000410371 100 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 RNU6-994P-201ENST00000410507 111 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.1□□□□□ -2.23
COL3A1P02461 RNU7-40P-201ENST00000516397 64 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 RNU6-902P-201ENST00000517212 91 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 AC008608.1-201ENST00000603910 127 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 MIR664A-201ENST00000626086 82 ntBASIC1.1□□□□□ -2.23
COL3A1P02461 Y_RNA.115-201ENST00000363272 98 ntBASIC1.09□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms