Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 RNU6-337P-201ENST00000391243 106 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 TRDV1-202ENST00000621643 102 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 RNU6-935P-201ENST00000410371 100 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 RNU7-164P-201ENST00000459221 62 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 MIR548O2-201ENST00000616090 70 ntBASIC-1.27□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.28□□□□□ -2.61
SCN3AQ9NY46 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.28□□□□□ -2.61
SCN3AQ9NY46 MIR451A-201ENST00000385059 72 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 RNU6-578P-201ENST00000390980 103 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 MIR548H3-201ENST00000408771 118 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 AC113618.1-201ENST00000416747 285 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 MIR4696-201ENST00000581431 70 ntBASIC-1.28□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 ELOCP20-201ENST00000422460 345 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 FGF7P4-201ENST00000509595 295 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 SNORA40.15-201ENST00000516884 107 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 AL137067.1-201ENST00000615933 120 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 AC021753.1-201ENST00000635724 168 ntBASIC-1.29□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU6-770P-201ENST00000363929 105 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU6-119P-201ENST00000364882 107 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU6-592P-201ENST00000411333 103 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU6-450P-201ENST00000364654 107 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU6-768P-201ENST00000384683 107 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 SNORD19B-201ENST00000459623 84 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 AP002392.1-201ENST00000537692 208 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 AC113195.1-201ENST00000579952 141 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 RNU2-4P-201ENST00000606190 192 ntBASIC-1.3□□□□□ -2.62
SCN3AQ9NY46 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.31□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.31□□□□□ -2.62
SCN3AQ9NY46 RNU6-90P-201ENST00000606352 106 ntBASIC-1.31□□□□□ -2.62
SCN3AQ9NY46 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.31□□□□□ -2.62
SCN3AQ9NY46 RNU6-309P-201ENST00000364573 106 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 SNORD114-17-201ENST00000364699 75 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 RNU6-466P-201ENST00000391224 103 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 MIR4282-201ENST00000583613 67 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 MIR124-2-201ENST00000385081 109 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 MIR1252-201ENST00000408861 65 ntBASIC-1.32□□□□□ -2.62
SCN3AQ9NY46 RNU6-495P-201ENST00000362995 107 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 MIR582-201ENST00000365731 98 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-1104P-201ENST00000384723 104 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-75P-201ENST00000515944 104 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-978P-201ENST00000364371 103 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 MIR548P-201ENST00000408336 84 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 AC138393.2-201ENST00000414742 246 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 AL161932.1-201ENST00000437408 146 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 AL121914.1-201ENST00000450188 156 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU7-24P-201ENST00000458867 62 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-719P-201ENST00000516671 104 ntBASIC-1.33□□□□□ -2.62
SCN3AQ9NY46 RNU6-54P-201ENST00000365563 107 ntBASIC-1.34□□□□□ -2.62
SCN3AQ9NY46 SNORD42.2-201ENST00000365570 69 ntBASIC-1.34□□□□□ -2.62
SCN3AQ9NY46 SNORD18B-201ENST00000365659 72 ntBASIC-1.34□□□□□ -2.62
SCN3AQ9NY46 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.34□□□□□ -2.62
SCN3AQ9NY46 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 MIR4520-1-201ENST00000582609 70 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 AL353803.5-201ENST00000599815 141 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 SNORA62.4-201ENST00000365504 151 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 MIR34C-201ENST00000384831 77 ntBASIC-1.35□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 RNY4P27-201ENST00000363341 96 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 MT-TI-201ENST00000387365 69 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 RNU6-576P-201ENST00000390854 102 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 AL353813.1-201ENST00000440700 253 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 RNY3P15-201ENST00000516297 97 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 MIR4536-1-201ENST00000583537 88 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 MIR3149-201ENST00000584629 83 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 AL512310.12-203ENST00000640543 90 ntBASIC-1.36□□□□□ -2.63
SCN3AQ9NY46 SNORD116-4-201ENST00000384733 96 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 MIR527-201ENST00000385244 85 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 U3.27-201ENST00000391237 200 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 AL442128.1-201ENST00000615151 90 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 MIR1302-1-201ENST00000637932 143 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.37□□□□□ -2.63
SCN3AQ9NY46 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.37□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 232 ms