Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RNU6-483P-201ENST00000384088 108 ntBASIC-3.06□□□□□ -2.9
SCAPERQ9BY12 SNORA40.4-201ENST00000390971 128 ntBASIC-3.06□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.441-201ENST00000384123 112 ntBASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 AL445567.1-201ENST00000439121 144 ntBASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 SNORD11.1-201ENST00000459482 85 ntBASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.713-201ENST00000517013 96 ntBASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 VN1R91P-201ENST00000594377 169 ntBASIC-3.07□□□□□ -2.9
SCAPERQ9BY12 RNU6-230P-201ENST00000362457 104 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 MIR548Q-201ENST00000408404 100 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 RNU6-373P-201ENST00000411247 98 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 Z83846.1-201ENST00000446798 265 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 RNU7-88P-201ENST00000458752 63 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 FGF7P7-201ENST00000514120 227 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 AC021443.1-201ENST00000604478 211 ntBASIC-3.08□□□□□ -2.9
SCAPERQ9BY12 Y_RNA.152-201ENST00000363578 100 ntBASIC-3.09□□□□□ -2.9
SCAPERQ9BY12 MIR616-201ENST00000385293 97 ntBASIC-3.09□□□□□ -2.9
SCAPERQ9BY12 RNU7-123P-201ENST00000515911 60 ntBASIC-3.09□□□□□ -2.9
SCAPERQ9BY12 RNU6-1090P-201ENST00000364065 94 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 SNORA33.1-201ENST00000364957 130 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.314-201ENST00000365114 102 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU6-1014P-201ENST00000383940 103 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.505-201ENST00000384489 102 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 AC138907.4-201ENST00000570107 226 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 snoU18.1-201ENST00000629629 71 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.3-201ENST00000362331 103 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.188-201ENST00000363952 111 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU6-1040P-201ENST00000383974 107 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.569-201ENST00000384749 103 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 AC096644.2-201ENST00000429278 159 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU7-154P-201ENST00000516194 62 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU6-453P-201ENST00000516819 85 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 U7.5-201ENST00000517224 61 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 RNU6-90P-201ENST00000606352 106 ntBASIC-3.1□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.39-201ENST00000362620 98 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 RNY4P9-201ENST00000363194 97 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 RNU6-978P-201ENST00000364371 103 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 RNU6-1034P-201ENST00000365335 101 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 DLEU2_2.2-201ENST00000615474 90 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 AL359880.1-201ENST00000621879 266 ntBASIC-3.11□□□□□ -2.91
SCAPERQ9BY12 RNU4-43P-201ENST00000410628 137 ntBASIC-3.12□□□□□ -2.91
SCAPERQ9BY12 RNU6-1148P-201ENST00000410992 104 ntBASIC-3.12□□□□□ -2.91
SCAPERQ9BY12 RNU7-24P-201ENST00000458867 62 ntBASIC-3.12□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.153-201ENST00000363615 91 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 Y_RNA.298-201ENST00000364960 107 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 MIR548A1-201ENST00000385041 97 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 MIR548F5-201ENST00000408421 86 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 RNU6-561P-201ENST00000516222 102 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 RNU6-521P-201ENST00000516663 105 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 AC120024.2-201ENST00000576526 175 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 AC124864.2-201ENST00000624736 186 ntBASIC-3.13□□□□□ -2.91
SCAPERQ9BY12 MIR519A2-201ENST00000384990 87 ntBASIC-3.14□□□□□ -2.91
SCAPERQ9BY12 RNU6-240P-201ENST00000516098 97 ntBASIC-3.14□□□□□ -2.91
SCAPERQ9BY12 AC024614.3-201ENST00000637860 256 ntBASIC-3.14□□□□□ -2.91
SCAPERQ9BY12 U8.20-201ENST00000459445 131 ntBASIC-3.15□□□□□ -2.91
SCAPERQ9BY12 RNU6-1234P-201ENST00000516877 103 ntBASIC-3.15□□□□□ -2.91
SCAPERQ9BY12 FTX_4.1-201ENST00000616291 147 ntBASIC-3.15□□□□□ -2.91
SCAPERQ9BY12 RNU4-24P-201ENST00000364565 139 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 SNORD115-31-201ENST00000365318 82 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 RNU6-662P-201ENST00000384253 104 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.474-201ENST00000384341 102 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 AL035461.1-201ENST00000421490 332 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 RNA5SP236-201ENST00000516169 116 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 AC009094.1-201ENST00000564443 426 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 MIR548W-201ENST00000581970 74 ntBASIC-3.16□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.217-201ENST00000364214 105 ntBASIC-3.17□□□□□ -2.92
SCAPERQ9BY12 snoU2_19.4-201ENST00000364329 80 ntBASIC-3.17□□□□□ -2.92
SCAPERQ9BY12 RNU6-563P-201ENST00000364872 108 ntBASIC-3.17□□□□□ -2.92
SCAPERQ9BY12 MTND4LP30-201ENST00000454092 297 ntBASIC-3.17□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.641-201ENST00000459414 105 ntBASIC-3.17□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.75-201ENST00000362927 97 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 RNU6-608P-201ENST00000383927 104 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 RNU6-260P-201ENST00000384092 107 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 SNORA19.1-201ENST00000410656 129 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 MIR23C-201ENST00000579846 100 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 RPS29P30-201ENST00000600975 111 ntBASIC-3.18□□□□□ -2.92
SCAPERQ9BY12 SNORD113-8-201ENST00000363497 74 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 MIR548G-201ENST00000408442 89 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 snoU13.10-201ENST00000459301 103 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 RNA5SP147-201ENST00000516493 109 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 AL050303.3-201ENST00000613704 284 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.80-201ENST00000362996 102 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.339-201ENST00000365325 102 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 AC099799.1-201ENST00000439809 192 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 HSPE1P25-201ENST00000455484 251 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.639-201ENST00000458981 102 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 RNU6-75P-201ENST00000515944 104 ntBASIC-3.19□□□□□ -2.92
SCAPERQ9BY12 RNU6-766P-201ENST00000362478 107 ntBASIC-3.2□□□□□ -2.92
SCAPERQ9BY12 SNORA63.2-201ENST00000362603 126 ntBASIC-3.2□□□□□ -2.92
SCAPERQ9BY12 Y_RNA.88-201ENST00000363029 99 ntBASIC-3.2□□□□□ -2.92
SCAPERQ9BY12 MIR620-201ENST00000385232 95 ntBASIC-3.2□□□□□ -2.92
SCAPERQ9BY12 RNU6-1177P-201ENST00000391058 104 ntBASIC-3.21□□□□□ -2.92
SCAPERQ9BY12 snoU13.17-201ENST00000458802 104 ntBASIC-3.21□□□□□ -2.92
Retrieved 100 of 98,524 protein–RNA pairs in 228.2 ms