Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNORD115-44-201ENST00000365391 82 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 SNORA40.8-201ENST00000411034 126 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 RN7SKP12-201ENST00000516275 143 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.677-201ENST00000516401 85 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 RNA5SP121-201ENST00000516537 101 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 TRDV1-202ENST00000621643 102 ntBASIC0.7□□□□□ -2.3
CLRN3Q8NCR9 SNORD58A-201ENST00000383875 65 ntBASIC0.69□□□□□ -2.3
CLRN3Q8NCR9 RNU6-945P-201ENST00000383947 107 ntBASIC0.69□□□□□ -2.3
CLRN3Q8NCR9 RNU6-1053P-201ENST00000515930 101 ntBASIC0.69□□□□□ -2.3
CLRN3Q8NCR9 RNU6-168P-201ENST00000516189 101 ntBASIC0.69□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.4-201ENST00000362333 112 ntBASIC0.68□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.283-201ENST00000364798 112 ntBASIC0.68□□□□□ -2.3
CLRN3Q8NCR9 AL603825.1-201ENST00000438481 80 ntBASIC0.68□□□□□ -2.3
CLRN3Q8NCR9 RNU6-957P-201ENST00000363652 99 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.348-201ENST00000365403 103 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 RNU7-74P-201ENST00000459104 62 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 snoU13.11-201ENST00000459219 104 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 MIR6857-201ENST00000613267 93 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 U7.3-201ENST00000616123 62 ntBASIC0.67□□□□□ -2.3
CLRN3Q8NCR9 RNU6-726P-201ENST00000364680 107 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 MIR518A1-201ENST00000385068 85 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 SNORD41.1-201ENST00000391000 69 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 Y_RNA.596-201ENST00000410462 109 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 RNU6-65P-201ENST00000516332 98 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 RNU4-54P-201ENST00000516428 129 ntBASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
CLRN3Q8NCR9 SNORD118-201ENST00000363593 134 ntBASIC0.65□□□□□ -2.31
CLRN3Q8NCR9 RNU6-716P-201ENST00000365621 103 ntBASIC0.65□□□□□ -2.31
CLRN3Q8NCR9 RNU6-321P-201ENST00000410912 106 ntBASIC0.65□□□□□ -2.31
CLRN3Q8NCR9 MIR3124-201ENST00000582636 67 ntBASIC0.65□□□□□ -2.31
CLRN3Q8NCR9 MIR7107-201ENST00000611489 80 ntBASIC0.65□□□□□ -2.31
CLRN3Q8NCR9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.64□□□□□ -2.31
CLRN3Q8NCR9 RNU6-519P-201ENST00000410590 108 ntBASIC0.64□□□□□ -2.31
CLRN3Q8NCR9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.64□□□□□ -2.31
CLRN3Q8NCR9 MIR4536-1-201ENST00000583537 88 ntBASIC0.64□□□□□ -2.31
CLRN3Q8NCR9 SNORA25.18-201ENST00000607153 114 ntBASIC0.64□□□□□ -2.31
CLRN3Q8NCR9 MIR532-201ENST00000385025 91 ntBASIC0.63□□□□□ -2.31
CLRN3Q8NCR9 RNA5SP89-201ENST00000410300 108 ntBASIC0.63□□□□□ -2.31
CLRN3Q8NCR9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.63□□□□□ -2.31
CLRN3Q8NCR9 MIR3920-201ENST00000581751 86 ntBASIC0.63□□□□□ -2.31
CLRN3Q8NCR9 RNU6-1126P-201ENST00000384002 107 ntBASIC0.62□□□□□ -2.31
CLRN3Q8NCR9 AL161932.1-201ENST00000437408 146 ntBASIC0.62□□□□□ -2.31
CLRN3Q8NCR9 RNU6-863P-201ENST00000515989 104 ntBASIC0.62□□□□□ -2.31
CLRN3Q8NCR9 RNU6-162P-201ENST00000516228 103 ntBASIC0.62□□□□□ -2.31
CLRN3Q8NCR9 U6.100-201ENST00000636230 99 ntBASIC0.62□□□□□ -2.31
CLRN3Q8NCR9 RNU6-640P-201ENST00000363693 105 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 RNU6-905P-201ENST00000384434 107 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 MIR520E-201ENST00000384867 87 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 AC098934.3-201ENST00000430450 190 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 MALAT1.1-201ENST00000618249 95 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 AL162376.1-201ENST00000624117 175 ntBASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.61□□□□□ -2.31
CLRN3Q8NCR9 Y_RNA.290-201ENST00000364879 114 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 SNORD101-201ENST00000384027 73 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 RNU2-59P-201ENST00000410482 191 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 MTRNR2L2-201ENST00000604882 87 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 MIR6866-201ENST00000638146 69 ntBASIC0.6□□□□□ -2.31
CLRN3Q8NCR9 RNU6-509P-201ENST00000363519 107 ntBASIC0.59□□□□□ -2.31
CLRN3Q8NCR9 RNU7-85P-201ENST00000458851 63 ntBASIC0.59□□□□□ -2.31
CLRN3Q8NCR9 AC073869.9-201ENST00000641610 120 ntBASIC0.59□□□□□ -2.31
CLRN3Q8NCR9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.220-201ENST00000364244 109 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 MIR617-201ENST00000385030 97 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 MIR548U-201ENST00000390728 81 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 SNORD4B-201ENST00000459083 72 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 RNU6-75P-201ENST00000515944 104 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 RNU6-1057P-201ENST00000517162 102 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.58□□□□□ -2.32
CLRN3Q8NCR9 RNU6-664P-201ENST00000362381 107 ntBASIC0.57□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.239-201ENST00000364444 113 ntBASIC0.57□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.508-201ENST00000384502 114 ntBASIC0.57□□□□□ -2.32
CLRN3Q8NCR9 RNU6-287P-201ENST00000516230 98 ntBASIC0.57□□□□□ -2.32
CLRN3Q8NCR9 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.57□□□□□ -2.32
CLRN3Q8NCR9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.56□□□□□ -2.32
CLRN3Q8NCR9 MIR2113-201ENST00000459007 91 ntBASIC0.56□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.694-201ENST00000516677 117 ntBASIC0.56□□□□□ -2.32
CLRN3Q8NCR9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.207-201ENST00000364142 106 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 MIR216B-201ENST00000390186 82 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNU6-935P-201ENST00000410371 100 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.609-201ENST00000410669 89 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNU6-848P-201ENST00000515948 107 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNU6-617P-201ENST00000516147 107 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNU6-473P-201ENST00000516164 107 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 RNA5SP102-201ENST00000516865 106 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 MIR4696-201ENST00000581431 70 ntBASIC0.55□□□□□ -2.32
CLRN3Q8NCR9 Y_RNA.190-201ENST00000363964 101 ntBASIC0.54□□□□□ -2.32
CLRN3Q8NCR9 RNU6-269P-201ENST00000391077 97 ntBASIC0.54□□□□□ -2.32
CLRN3Q8NCR9 MTATP6P29-201ENST00000415057 132 ntBASIC0.54□□□□□ -2.32
CLRN3Q8NCR9 SNORA68.3-201ENST00000515906 83 ntBASIC0.54□□□□□ -2.32
CLRN3Q8NCR9 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
CLRN3Q8NCR9 RNU6-811P-201ENST00000384069 107 ntBASIC0.53□□□□□ -2.32
CLRN3Q8NCR9 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
CLRN3Q8NCR9 MIR518E-201ENST00000385252 88 ntBASIC0.53□□□□□ -2.32
CLRN3Q8NCR9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms