Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RNU7-123P-201ENST00000515911 60 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 SNORD116-29-201ENST00000384516 83 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 RNA5SP236-201ENST00000516169 116 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 AC104985.2-201ENST00000620598 500 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 TRDV1-202ENST00000621643 102 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 AC090574.1-201ENST00000623186 233 ntBASIC-1.73□□□□□ -2.69
NUP98P52948 RNU6-290P-201ENST00000365212 101 ntBASIC-1.74□□□□□ -2.69
NUP98P52948 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.74□□□□□ -2.69
NUP98P52948 SNORA25.1-201ENST00000362326 128 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 RNY4-201ENST00000516507 96 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 MIR4760-201ENST00000585040 80 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 MIR6888-201ENST00000621977 67 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
NUP98P52948 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 RNU6-957P-201ENST00000363652 99 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 RNU1-115P-201ENST00000365329 160 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 MIR4756-201ENST00000577874 78 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 MIR3688-2-201ENST00000636963 87 ntBASIC-1.75□□□□□ -2.69
NUP98P52948 RNU6-54P-201ENST00000365563 107 ntBASIC-1.76□□□□□ -2.69
NUP98P52948 RNU6-240P-201ENST00000516098 97 ntBASIC-1.76□□□□□ -2.69
NUP98P52948 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 SNORD101-201ENST00000384027 73 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 MTND1P29-201ENST00000448112 647 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 RNU7-164P-201ENST00000459221 62 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 RNU6-720P-201ENST00000516363 108 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 MIR3908-201ENST00000579798 126 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 MIR4744-201ENST00000581563 82 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 Y_RNA.166-201ENST00000363730 102 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 RNU6-695P-201ENST00000391157 104 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 MIR4464-201ENST00000580818 92 ntBASIC-1.77□□□□□ -2.69
NUP98P52948 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.78□□□□□ -2.69
NUP98P52948 RNU6-103P-201ENST00000363686 107 ntBASIC-1.78□□□□□ -2.69
NUP98P52948 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.78□□□□□ -2.69
NUP98P52948 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.78□□□□□ -2.69
NUP98P52948 MIR4696-201ENST00000581431 70 ntBASIC-1.78□□□□□ -2.69
NUP98P52948 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 RNU6-79P-201ENST00000362511 107 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 RNY1P11-201ENST00000363759 113 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 RNU6-80P-201ENST00000384195 107 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 U3.27-201ENST00000391237 200 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 MIR1277-201ENST00000408536 78 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 RNU6-168P-201ENST00000516189 101 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1.79□□□□□ -2.7
NUP98P52948 RNA5SP405-201ENST00000363059 114 ntBASIC-1.8□□□□□ -2.7
NUP98P52948 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.8□□□□□ -2.7
NUP98P52948 AL353691.2-201ENST00000443795 59 ntBASIC-1.8□□□□□ -2.7
NUP98P52948 RNU6-235P-201ENST00000362644 107 ntBASIC-1.8□□□□□ -2.7
NUP98P52948 AL121914.1-201ENST00000450188 156 ntBASIC-1.8□□□□□ -2.7
NUP98P52948 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 SNORD115-22-201ENST00000364456 82 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 ELOCP20-201ENST00000422460 345 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 RNU7-152P-201ENST00000458982 64 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 RNU6-90P-201ENST00000606352 106 ntBASIC-1.81□□□□□ -2.7
NUP98P52948 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-1.82□□□□□ -2.7
NUP98P52948 FGF7P4-201ENST00000509595 295 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 AC084781.2-201ENST00000615568 161 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 MIR582-201ENST00000365731 98 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 Y_RNA.474-201ENST00000384341 102 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 MIR487B-201ENST00000385021 84 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 RNU6-121P-201ENST00000410525 99 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 RNU6-719P-201ENST00000516671 104 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 AP002392.1-201ENST00000537692 208 ntBASIC-1.82□□□□□ -2.7
NUP98P52948 SNORD115-19-201ENST00000363098 82 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 SNORD115-18-201ENST00000363293 82 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 SNORD115-17-201ENST00000364612 82 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 AL161932.1-201ENST00000437408 146 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 AP002795.1-201ENST00000534879 84 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 AC090971.5-201ENST00000621102 293 ntBASIC-1.83□□□□□ -2.7
NUP98P52948 RNU6-400P-201ENST00000391173 106 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 RNU6-381P-201ENST00000391259 108 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 MTND4LP32-201ENST00000636111 270 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 RNU4-17P-201ENST00000365598 141 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 FGF7P6-202ENST00000451282 293 ntBASIC-1.84□□□□□ -2.7
NUP98P52948 AC069439.1-201ENST00000494739 167 ntBASIC-1.84□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 370.7 ms