Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 SNORD116-15-201ENST00000384445 92 ntBASIC0.19□□□□□ -2.38
PDX1P52945 SNORD116-19-201ENST00000384729 92 ntBASIC0.19□□□□□ -2.38
PDX1P52945 MIR760-201ENST00000390220 80 ntBASIC0.19□□□□□ -2.38
PDX1P52945 MIR548G-201ENST00000408442 89 ntBASIC0.19□□□□□ -2.38
PDX1P52945 RNU7-129P-201ENST00000516128 62 ntBASIC0.19□□□□□ -2.38
PDX1P52945 RNU6-1232P-201ENST00000516299 86 ntBASIC0.19□□□□□ -2.38
PDX1P52945 AC007012.1-201ENST00000567192 175 ntBASIC0.19□□□□□ -2.38
PDX1P52945 SNORA70.25-201ENST00000612741 95 ntBASIC0.19□□□□□ -2.38
PDX1P52945 Y_RNA.323-201ENST00000365157 109 ntBASIC0.18□□□□□ -2.38
PDX1P52945 RNU6-269P-201ENST00000391077 97 ntBASIC0.18□□□□□ -2.38
PDX1P52945 MIR1912-201ENST00000410389 80 ntBASIC0.18□□□□□ -2.38
PDX1P52945 AL442128.1-201ENST00000615151 90 ntBASIC0.18□□□□□ -2.38
PDX1P52945 Y_RNA.57-201ENST00000362806 113 ntBASIC0.17□□□□□ -2.38
PDX1P52945 MIR548A1-201ENST00000385041 97 ntBASIC0.17□□□□□ -2.38
PDX1P52945 MIR577-201ENST00000385196 96 ntBASIC0.17□□□□□ -2.38
PDX1P52945 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
PDX1P52945 RPL39P34-201ENST00000477141 156 ntBASIC0.17□□□□□ -2.38
PDX1P52945 MIR4679-2-201ENST00000578358 77 ntBASIC0.17□□□□□ -2.38
PDX1P52945 MIR3920-201ENST00000581751 86 ntBASIC0.17□□□□□ -2.38
PDX1P52945 SNORA9.1-201ENST00000362412 131 ntBASIC0.16□□□□□ -2.38
PDX1P52945 Y_RNA.173-201ENST00000363776 113 ntBASIC0.16□□□□□ -2.38
PDX1P52945 Y_RNA.433-201ENST00000384089 102 ntBASIC0.16□□□□□ -2.38
PDX1P52945 RNU6-1333P-201ENST00000516162 93 ntBASIC0.16□□□□□ -2.38
PDX1P52945 MIR5190-201ENST00000581537 80 ntBASIC0.16□□□□□ -2.38
PDX1P52945 RNU6-90P-201ENST00000606352 106 ntBASIC0.16□□□□□ -2.38
PDX1P52945 U6.95-201ENST00000636931 70 ntBASIC0.16□□□□□ -2.38
PDX1P52945 Y_RNA.309-201ENST00000365046 111 ntBASIC0.15□□□□□ -2.39
PDX1P52945 RNA5SP128-201ENST00000365305 116 ntBASIC0.15□□□□□ -2.39
PDX1P52945 Y_RNA.353-201ENST00000365440 108 ntBASIC0.15□□□□□ -2.39
PDX1P52945 Y_RNA.377-201ENST00000365644 108 ntBASIC0.15□□□□□ -2.39
PDX1P52945 RNU6-127P-201ENST00000390897 107 ntBASIC0.15□□□□□ -2.39
PDX1P52945 RNA5SP299-201ENST00000391203 116 ntBASIC0.15□□□□□ -2.39
PDX1P52945 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.15□□□□□ -2.39
PDX1P52945 RNU7-13P-201ENST00000516413 62 ntBASIC0.15□□□□□ -2.39
PDX1P52945 MIR4315-1-201ENST00000636800 73 ntBASIC0.15□□□□□ -2.39
PDX1P52945 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.15□□□□□ -2.39
PDX1P52945 MIR4315-2-201ENST00000640925 73 ntBASIC0.15□□□□□ -2.39
PDX1P52945 SNORA2A-201ENST00000383885 135 ntBASIC0.14□□□□□ -2.39
PDX1P52945 MIR548A3-201ENST00000385297 97 ntBASIC0.14□□□□□ -2.39
PDX1P52945 MIR501-201ENST00000390204 84 ntBASIC0.14□□□□□ -2.39
PDX1P52945 RNU6-1254P-201ENST00000391266 104 ntBASIC0.14□□□□□ -2.39
PDX1P52945 MIR548M-201ENST00000408260 86 ntBASIC0.14□□□□□ -2.39
PDX1P52945 AL161932.1-201ENST00000437408 146 ntBASIC0.14□□□□□ -2.39
PDX1P52945 SNORD36A-201ENST00000362874 73 ntBASIC0.13□□□□□ -2.39
PDX1P52945 Y_RNA.261-201ENST00000364631 102 ntBASIC0.13□□□□□ -2.39
PDX1P52945 U8.6-201ENST00000364939 135 ntBASIC0.13□□□□□ -2.39
PDX1P52945 RNU6-959P-201ENST00000384671 107 ntBASIC0.13□□□□□ -2.39
PDX1P52945 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
PDX1P52945 RNA5SP484-201ENST00000458857 111 ntBASIC0.13□□□□□ -2.39
PDX1P52945 AC068339.1-201ENST00000526965 141 ntBASIC0.13□□□□□ -2.39
PDX1P52945 MIR4694-201ENST00000578534 80 ntBASIC0.13□□□□□ -2.39
PDX1P52945 MIR548AG2-201ENST00000581228 64 ntBASIC0.13□□□□□ -2.39
PDX1P52945 AL670379.3-201ENST00000605040 251 ntBASIC0.13□□□□□ -2.39
PDX1P52945 MIR499B-201ENST00000636498 73 ntBASIC0.13□□□□□ -2.39
PDX1P52945 SNORA42.1-201ENST00000363515 137 ntBASIC0.12□□□□□ -2.39
PDX1P52945 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.12□□□□□ -2.39
PDX1P52945 RNU6-848P-201ENST00000515948 107 ntBASIC0.12□□□□□ -2.39
PDX1P52945 RNU6-617P-201ENST00000516147 107 ntBASIC0.12□□□□□ -2.39
PDX1P52945 RNU6-473P-201ENST00000516164 107 ntBASIC0.12□□□□□ -2.39
PDX1P52945 RNU6-1049P-201ENST00000516414 107 ntBASIC0.12□□□□□ -2.39
PDX1P52945 MIR3613-201ENST00000579844 87 ntBASIC0.12□□□□□ -2.39
PDX1P52945 uc_338.28-201ENST00000612082 187 ntBASIC0.12□□□□□ -2.39
PDX1P52945 TRDV1-202ENST00000621643 102 ntBASIC0.12□□□□□ -2.39
PDX1P52945 RNU6-832P-201ENST00000363319 107 ntBASIC0.11□□□□□ -2.39
PDX1P52945 RNU6-1163P-201ENST00000364516 107 ntBASIC0.11□□□□□ -2.39
PDX1P52945 MIR643-201ENST00000385267 97 ntBASIC0.11□□□□□ -2.39
PDX1P52945 RNU6-243P-201ENST00000391140 107 ntBASIC0.11□□□□□ -2.39
PDX1P52945 NAMPTP3-201ENST00000569273 224 ntBASIC0.11□□□□□ -2.39
PDX1P52945 U6.100-201ENST00000636230 99 ntBASIC0.11□□□□□ -2.39
PDX1P52945 AC073869.9-201ENST00000641610 120 ntBASIC0.11□□□□□ -2.39
PDX1P52945 TMSB4XP3-201ENST00000445144 114 ntBASIC0.1□□□□□ -2.39
PDX1P52945 AC104408.1-201ENST00000605241 170 ntBASIC0.1□□□□□ -2.39
PDX1P52945 RNY3P2-201ENST00000362918 102 ntBASIC0.09□□□□□ -2.4
PDX1P52945 Y_RNA.78-201ENST00000362970 110 ntBASIC0.09□□□□□ -2.4
PDX1P52945 RNU6-1244P-201ENST00000363614 108 ntBASIC0.09□□□□□ -2.4
PDX1P52945 RNU6-81P-201ENST00000365608 104 ntBASIC0.09□□□□□ -2.4
PDX1P52945 AC006210.1-201ENST00000424882 111 ntBASIC0.09□□□□□ -2.4
PDX1P52945 RNA5SP285-201ENST00000516619 119 ntBASIC0.09□□□□□ -2.4
PDX1P52945 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.09□□□□□ -2.4
PDX1P52945 MIR5009-201ENST00000578736 100 ntBASIC0.09□□□□□ -2.4
PDX1P52945 AC096720.1-201ENST00000604441 183 ntBASIC0.09□□□□□ -2.4
PDX1P52945 AL365222.1-201ENST00000614661 98 ntBASIC0.09□□□□□ -2.4
PDX1P52945 RNU6-957P-201ENST00000363652 99 ntBASIC0.08□□□□□ -2.4
PDX1P52945 RNU6-880P-201ENST00000384526 107 ntBASIC0.08□□□□□ -2.4
PDX1P52945 Y_RNA.563-201ENST00000384707 108 ntBASIC0.08□□□□□ -2.4
PDX1P52945 Y_RNA.659-201ENST00000515994 113 ntBASIC0.08□□□□□ -2.4
PDX1P52945 RNA5SP395-201ENST00000516567 118 ntBASIC0.08□□□□□ -2.4
PDX1P52945 MIR5706-201ENST00000579841 80 ntBASIC0.08□□□□□ -2.4
PDX1P52945 MIR6759-201ENST00000638110 65 ntBASIC0.08□□□□□ -2.4
PDX1P52945 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.08□□□□□ -2.4
PDX1P52945 SNORD114-5-201ENST00000362928 70 ntBASIC0.07□□□□□ -2.4
PDX1P52945 RNA5SP214-201ENST00000363378 118 ntBASIC0.07□□□□□ -2.4
PDX1P52945 Y_RNA.281-201ENST00000364774 94 ntBASIC0.07□□□□□ -2.4
PDX1P52945 MIR519E-201ENST00000385075 84 ntBASIC0.07□□□□□ -2.4
PDX1P52945 MIR548H2-201ENST00000408874 88 ntBASIC0.07□□□□□ -2.4
PDX1P52945 AC109327.2-201ENST00000448339 378 ntBASIC0.07□□□□□ -2.4
PDX1P52945 RNU6-509P-201ENST00000363519 107 ntBASIC0.06□□□□□ -2.4
PDX1P52945 Y_RNA.163-201ENST00000363702 113 ntBASIC0.06□□□□□ -2.4
PDX1P52945 SNORD114-9-201ENST00000364370 72 ntBASIC0.06□□□□□ -2.4
PDX1P52945 SNORD115-44-201ENST00000365391 82 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms