Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AP001318.4-201ENST00000616637 121 ntBASIC0.7□□□□□ -2.3
SOX2P48431 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.7□□□□□ -2.3
SOX2P48431 SNORD115-24-201ENST00000363528 82 ntBASIC0.69□□□□□ -2.3
SOX2P48431 MIR598-201ENST00000384868 97 ntBASIC0.69□□□□□ -2.3
SOX2P48431 SNORA40.13-201ENST00000516379 120 ntBASIC0.69□□□□□ -2.3
SOX2P48431 MIR4639-201ENST00000584938 69 ntBASIC0.69□□□□□ -2.3
SOX2P48431 MIR6788-201ENST00000618842 66 ntBASIC0.69□□□□□ -2.3
SOX2P48431 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.69□□□□□ -2.3
SOX2P48431 SNORD36A-201ENST00000362874 73 ntBASIC0.68□□□□□ -2.3
SOX2P48431 SNORD18A-201ENST00000363753 72 ntBASIC0.68□□□□□ -2.3
SOX2P48431 RNU6-644P-201ENST00000391155 98 ntBASIC0.68□□□□□ -2.3
SOX2P48431 RNU6-887P-201ENST00000410660 100 ntBASIC0.68□□□□□ -2.3
SOX2P48431 MTATP8P2-201ENST00000435212 202 ntBASIC0.68□□□□□ -2.3
SOX2P48431 RNU7-61P-201ENST00000515897 61 ntBASIC0.68□□□□□ -2.3
SOX2P48431 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.68□□□□□ -2.3
SOX2P48431 MIR6866-201ENST00000638146 69 ntBASIC0.68□□□□□ -2.3
SOX2P48431 SNORD114-26-201ENST00000363543 72 ntBASIC0.67□□□□□ -2.3
SOX2P48431 Y_RNA.221-201ENST00000364248 96 ntBASIC0.67□□□□□ -2.3
SOX2P48431 SNORD28-201ENST00000384706 75 ntBASIC0.67□□□□□ -2.3
SOX2P48431 MIR140-201ENST00000385282 100 ntBASIC0.67□□□□□ -2.3
SOX2P48431 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.67□□□□□ -2.3
SOX2P48431 RNU6-168P-201ENST00000516189 101 ntBASIC0.67□□□□□ -2.3
SOX2P48431 AC025521.1-201ENST00000621624 286 ntBASIC0.67□□□□□ -2.3
SOX2P48431 RNY1P8-201ENST00000383970 114 ntBASIC0.66□□□□□ -2.3
SOX2P48431 RNU6-524P-201ENST00000384270 107 ntBASIC0.66□□□□□ -2.3
SOX2P48431 RPS29P1-201ENST00000465274 159 ntBASIC0.66□□□□□ -2.3
SOX2P48431 Y_RNA.677-201ENST00000516401 85 ntBASIC0.66□□□□□ -2.3
SOX2P48431 RNA5SP94-201ENST00000516917 108 ntBASIC0.66□□□□□ -2.3
SOX2P48431 AL513043.2-201ENST00000573941 143 ntBASIC0.66□□□□□ -2.3
SOX2P48431 MIR3973-201ENST00000579824 107 ntBASIC0.66□□□□□ -2.3
SOX2P48431 AC244669.1-204ENST00000621564 178 ntBASIC0.66□□□□□ -2.3
SOX2P48431 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.66□□□□□ -2.3
SOX2P48431 RNU1-93P-201ENST00000364704 169 ntBASIC0.65□□□□□ -2.31
SOX2P48431 MIR520E-201ENST00000384867 87 ntBASIC0.65□□□□□ -2.31
SOX2P48431 RNA5SP47-201ENST00000517230 109 ntBASIC0.65□□□□□ -2.31
SOX2P48431 MIR6857-201ENST00000613267 93 ntBASIC0.65□□□□□ -2.31
SOX2P48431 AC022709.1-201ENST00000615967 87 ntBASIC0.65□□□□□ -2.31
SOX2P48431 MIR6767-201ENST00000637302 66 ntBASIC0.65□□□□□ -2.31
SOX2P48431 Y_RNA.348-201ENST00000365403 103 ntBASIC0.64□□□□□ -2.31
SOX2P48431 RNU6-466P-201ENST00000391224 103 ntBASIC0.64□□□□□ -2.31
SOX2P48431 RNA5SP89-201ENST00000410300 108 ntBASIC0.64□□□□□ -2.31
SOX2P48431 SCARNA16.5-201ENST00000517114 183 ntBASIC0.64□□□□□ -2.31
SOX2P48431 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
SOX2P48431 MIR96-201ENST00000362288 78 ntBASIC0.63□□□□□ -2.31
SOX2P48431 RNA5SP403-201ENST00000363598 108 ntBASIC0.63□□□□□ -2.31
SOX2P48431 SNORD116-10-201ENST00000363791 102 ntBASIC0.63□□□□□ -2.31
SOX2P48431 SNORD58A-201ENST00000383875 65 ntBASIC0.63□□□□□ -2.31
SOX2P48431 MIR548J-201ENST00000408833 112 ntBASIC0.63□□□□□ -2.31
SOX2P48431 RNU7-104P-201ENST00000459398 79 ntBASIC0.63□□□□□ -2.31
SOX2P48431 Y_RNA.648-201ENST00000459455 110 ntBASIC0.63□□□□□ -2.31
SOX2P48431 RNU7-161P-201ENST00000517289 62 ntBASIC0.63□□□□□ -2.31
SOX2P48431 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.63□□□□□ -2.31
SOX2P48431 U7.3-201ENST00000616123 62 ntBASIC0.63□□□□□ -2.31
SOX2P48431 MIR5000-201ENST00000577717 103 ntBASIC0.62□□□□□ -2.31
SOX2P48431 AC092634.7-201ENST00000621022 103 ntBASIC0.62□□□□□ -2.31
SOX2P48431 MIR373-201ENST00000362273 69 ntBASIC0.61□□□□□ -2.31
SOX2P48431 MIR548L-201ENST00000408303 86 ntBASIC0.61□□□□□ -2.31
SOX2P48431 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.61□□□□□ -2.31
SOX2P48431 snoU13.11-201ENST00000459219 104 ntBASIC0.61□□□□□ -2.31
SOX2P48431 RNU6-162P-201ENST00000516228 103 ntBASIC0.61□□□□□ -2.31
SOX2P48431 RNU6-1265P-201ENST00000516342 103 ntBASIC0.61□□□□□ -2.31
SOX2P48431 TRDV1-202ENST00000621643 102 ntBASIC0.61□□□□□ -2.31
SOX2P48431 AC067863.3-201ENST00000624172 122 ntBASIC0.61□□□□□ -2.31
SOX2P48431 SNORA36.1-201ENST00000363424 132 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNU6-957P-201ENST00000363652 99 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNU6-905P-201ENST00000384434 107 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNA5SP227-201ENST00000516184 113 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNU7-13P-201ENST00000516413 62 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNA5SP268-201ENST00000516828 124 ntBASIC0.6□□□□□ -2.31
SOX2P48431 MIR6828-201ENST00000636181 60 ntBASIC0.6□□□□□ -2.31
SOX2P48431 RNU6-640P-201ENST00000363693 105 ntBASIC0.59□□□□□ -2.31
SOX2P48431 RNA5SP517-201ENST00000364724 117 ntBASIC0.59□□□□□ -2.31
SOX2P48431 Y_RNA.283-201ENST00000364798 112 ntBASIC0.59□□□□□ -2.31
SOX2P48431 Y_RNA.540-201ENST00000384638 111 ntBASIC0.59□□□□□ -2.31
SOX2P48431 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.59□□□□□ -2.31
SOX2P48431 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.59□□□□□ -2.31
SOX2P48431 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
SOX2P48431 Y_RNA.290-201ENST00000364879 114 ntBASIC0.58□□□□□ -2.32
SOX2P48431 SNORA8.2-201ENST00000384372 139 ntBASIC0.58□□□□□ -2.32
SOX2P48431 MIR216A-201ENST00000385063 110 ntBASIC0.58□□□□□ -2.32
SOX2P48431 SNORD71-201ENST00000411292 86 ntBASIC0.58□□□□□ -2.32
SOX2P48431 MTATP6P29-201ENST00000415057 132 ntBASIC0.58□□□□□ -2.32
SOX2P48431 AL161932.1-201ENST00000437408 146 ntBASIC0.58□□□□□ -2.32
SOX2P48431 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.58□□□□□ -2.32
SOX2P48431 MALAT1.1-201ENST00000618249 95 ntBASIC0.58□□□□□ -2.32
SOX2P48431 SNORD115-44-201ENST00000365391 82 ntBASIC0.57□□□□□ -2.32
SOX2P48431 RNU6-716P-201ENST00000365621 103 ntBASIC0.57□□□□□ -2.32
SOX2P48431 RNU6-519P-201ENST00000410590 108 ntBASIC0.57□□□□□ -2.32
SOX2P48431 SNORA40.8-201ENST00000411034 126 ntBASIC0.57□□□□□ -2.32
SOX2P48431 RNU6-65P-201ENST00000516332 98 ntBASIC0.57□□□□□ -2.32
SOX2P48431 AC018659.1-201ENST00000551083 169 ntBASIC0.57□□□□□ -2.32
SOX2P48431 MIR4536-1-201ENST00000583537 88 ntBASIC0.57□□□□□ -2.32
SOX2P48431 MIR6779-201ENST00000617283 64 ntBASIC0.57□□□□□ -2.32
SOX2P48431 PVT1_3.1-201ENST00000620853 95 ntBASIC0.57□□□□□ -2.32
SOX2P48431 MIR6835-201ENST00000621552 64 ntBASIC0.57□□□□□ -2.32
SOX2P48431 RNU6-945P-201ENST00000383947 107 ntBASIC0.56□□□□□ -2.32
SOX2P48431 Y_RNA.596-201ENST00000410462 109 ntBASIC0.56□□□□□ -2.32
SOX2P48431 CYP3A137P-201ENST00000562436 69 ntBASIC0.56□□□□□ -2.32
SOX2P48431 RN7SL793P-201ENST00000583259 296 ntBASIC0.56□□□□□ -2.32
SOX2P48431 Y_RNA.190-201ENST00000363964 101 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 395.8 ms