Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-664P-201ENST00000362381 107 ntBASIC1.45□□□□□ -2.18
LIMS1P48059 RNU6-291P-201ENST00000384720 107 ntBASIC1.45□□□□□ -2.18
LIMS1P48059 AL591704.2-201ENST00000421658 181 ntBASIC1.45□□□□□ -2.18
LIMS1P48059 RNU6-303P-201ENST00000517091 106 ntBASIC1.45□□□□□ -2.18
LIMS1P48059 Y_RNA.239-201ENST00000364444 113 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 RNU6-1051P-201ENST00000365471 102 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LIMS1P48059 SNORD101-201ENST00000384027 73 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 SNORA80D-201ENST00000384488 135 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 MIR599-201ENST00000385069 95 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 SNORA17.3-201ENST00000391159 129 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.44□□□□□ -2.18
LIMS1P48059 RNU6-807P-201ENST00000516805 107 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 AC023827.1-201ENST00000569247 97 ntBASIC1.44□□□□□ -2.18
LIMS1P48059 RNU6-411P-201ENST00000384451 107 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 AP1B1P2-201ENST00000416196 106 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 AC244505.6-201ENST00000452829 130 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 snoU13.17-201ENST00000458802 104 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 AC114801.3-201ENST00000510231 177 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 SNORD79.1-201ENST00000516069 84 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 MIR8081-201ENST00000611533 95 ntBASIC1.43□□□□□ -2.18
LIMS1P48059 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
LIMS1P48059 RNA5SP245-201ENST00000364239 121 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 MIR938-201ENST00000401216 83 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 Y_RNA.596-201ENST00000410462 109 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 MIR4804-201ENST00000581683 73 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 MIR8070-201ENST00000616510 88 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 MIR7111-201ENST00000619751 72 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 AC027335.2-201ENST00000624030 375 ntBASIC1.42□□□□□ -2.18
LIMS1P48059 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.41□□□□□ -2.18
LIMS1P48059 RNU5F-1-201ENST00000362507 117 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 RNU6-535P-201ENST00000384722 107 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 RNU6-910P-201ENST00000390844 107 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 RNU4-62P-201ENST00000410125 130 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 RNU7-102P-201ENST00000458948 62 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 RNU7-90P-201ENST00000459216 62 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 YWHAEP2-201ENST00000580066 112 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 YWHAEP3-201ENST00000582767 121 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.41□□□□□ -2.18
LIMS1P48059 Y_RNA.12-201ENST00000362393 112 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 Y_RNA.118-201ENST00000363300 101 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 Y_RNA.207-201ENST00000364142 106 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 RNU6-364P-201ENST00000384387 107 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 RNU6-935P-201ENST00000410371 100 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.4□□□□□ -2.19
LIMS1P48059 RNU6-1015P-201ENST00000517121 99 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 SNORD53B-201ENST00000577887 78 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 MIR4484-201ENST00000582855 83 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 AC008608.1-201ENST00000603910 127 ntBASIC1.4□□□□□ -2.19
LIMS1P48059 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
LIMS1P48059 RNY4P3-201ENST00000365254 95 ntBASIC1.39□□□□□ -2.19
LIMS1P48059 SNORA24B-201ENST00000384176 131 ntBASIC1.39□□□□□ -2.19
LIMS1P48059 RNU7-56P-201ENST00000458744 62 ntBASIC1.39□□□□□ -2.19
LIMS1P48059 RNU6-687P-201ENST00000516443 89 ntBASIC1.39□□□□□ -2.19
LIMS1P48059 BX248123.2-201ENST00000606318 124 ntBASIC1.39□□□□□ -2.19
LIMS1P48059 Y_RNA.36-201ENST00000362602 112 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 MIR942-201ENST00000401111 86 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 Y_RNA.681-201ENST00000516445 113 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 RNU6-539P-201ENST00000516665 103 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 MIR3140-201ENST00000583685 90 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.38□□□□□ -2.19
LIMS1P48059 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.38□□□□□ -2.19
LIMS1P48059 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.38□□□□□ -2.19
LIMS1P48059 RNU6-590P-201ENST00000365039 107 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
LIMS1P48059 SNORD12-201ENST00000391002 90 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 MIR1323-201ENST00000408090 73 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 MIR1304-201ENST00000408243 91 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 Y_RNA.606-201ENST00000410579 103 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 RNU6-634P-201ENST00000459134 106 ntBASIC1.37□□□□□ -2.19
LIMS1P48059 RNU6-340P-201ENST00000364005 107 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNU6-955P-201ENST00000410497 104 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNU6-994P-201ENST00000410507 111 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNU6-871P-201ENST00000516122 100 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNU6-70P-201ENST00000516438 60 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 uc_338.16-201ENST00000621804 95 ntBASIC1.36□□□□□ -2.19
LIMS1P48059 Y_RNA.32-201ENST00000362589 110 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU1-42P-201ENST00000364033 160 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 Y_RNA.355-201ENST00000365462 98 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU6-154P-201ENST00000384306 106 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU1-119P-201ENST00000391122 165 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 MIR1827-201ENST00000408549 66 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU2-59P-201ENST00000410482 191 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU7-95P-201ENST00000459222 64 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 snoU13.18-201ENST00000459483 104 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 RNU6-977P-201ENST00000516411 103 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 MIR4303-201ENST00000581299 66 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 U6.81-201ENST00000612550 106 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 MIR664A-201ENST00000626086 82 ntBASIC1.35□□□□□ -2.19
LIMS1P48059 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
LIMS1P48059 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.19
LIMS1P48059 Y_RNA.327-201ENST00000365201 102 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 SNORD115-44-201ENST00000365391 82 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 MIR451A-201ENST00000385059 72 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 MIR517C-201ENST00000385103 95 ntBASIC1.34□□□□□ -2.19
LIMS1P48059 RNU6-587P-201ENST00000391282 106 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms