Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNU6-875P-201ENST00000516488 106 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 RNY4P20-201ENST00000516678 93 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 MIR4696-201ENST00000581431 70 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 MIR8068-201ENST00000618032 68 ntBASIC-1.62□□□□□ -2.67
LIMS3P0CW19 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-275P-201ENST00000364910 107 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-466P-201ENST00000391224 103 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-935P-201ENST00000410371 100 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 HAR1A.1-201ENST00000459583 118 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 RNU6-762P-201ENST00000517107 102 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 AC139792.2-201ENST00000624218 587 ntBASIC-1.63□□□□□ -2.67
LIMS3P0CW19 Y_RNA.308-201ENST00000365043 101 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 RNU6-768P-201ENST00000384683 107 ntBASIC-1.64□□□□□ -2.67
LIMS3P0CW19 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU6-54P-201ENST00000365563 107 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 AC097510.1-201ENST00000510945 133 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU7-6P-201ENST00000516845 62 ntBASIC-1.65□□□□□ -2.67
LIMS3P0CW19 RNU6-235P-201ENST00000362644 107 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-19-201ENST00000363098 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-18-201ENST00000363293 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD115-17-201ENST00000364612 82 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 SNORD18B-201ENST00000365659 72 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNU6-493P-201ENST00000391321 108 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNA5SP266-201ENST00000410273 108 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNU6-592P-201ENST00000411333 103 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 AL353813.1-201ENST00000440700 253 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 MTND1P19-201ENST00000511780 315 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 RNY3P16-201ENST00000516338 101 ntBASIC-1.66□□□□□ -2.68
LIMS3P0CW19 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 SNORA75.5-201ENST00000391291 81 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 RBMX2P4-201ENST00000441256 376 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 SNORD18.2-201ENST00000459604 70 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 MIR4795-201ENST00000584182 89 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 AL137067.1-201ENST00000615933 120 ntBASIC-1.67□□□□□ -2.68
LIMS3P0CW19 RNU6-905P-201ENST00000384434 107 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 RNU6-706P-201ENST00000517229 104 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 RNU6-90P-201ENST00000606352 106 ntBASIC-1.68□□□□□ -2.68
LIMS3P0CW19 Y_RNA.153-201ENST00000363615 91 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 U3.27-201ENST00000391237 200 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 MIR3149-201ENST00000584629 83 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 MIR6773-201ENST00000612812 74 ntBASIC-1.69□□□□□ -2.68
LIMS3P0CW19 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.7□□□□□ -2.68
LIMS3P0CW19 MIR451A-201ENST00000385059 72 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR548G-201ENST00000408442 89 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR4643-201ENST00000577473 78 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 MIR3163-201ENST00000581592 73 ntBASIC-1.71□□□□□ -2.68
LIMS3P0CW19 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 SNORD38.1-201ENST00000363863 68 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 SNORD115-23-201ENST00000364461 82 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU6-713P-201ENST00000384761 107 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 snoU83B.1-201ENST00000517136 88 ntBASIC-1.72□□□□□ -2.68
LIMS3P0CW19 RNU4-40P-201ENST00000364351 143 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIRLET7B-201ENST00000385140 83 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIR4680-201ENST00000580906 66 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 U6.106-201ENST00000636360 105 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 MIR6844-201ENST00000637122 62 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 U6.104-201ENST00000637979 90 ntBASIC-1.73□□□□□ -2.69
LIMS3P0CW19 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNU6-474P-201ENST00000384243 107 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-1.74□□□□□ -2.69
LIMS3P0CW19 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNA5SP461-201ENST00000516451 104 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AP002392.1-201ENST00000537692 208 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 AL512310.12-203ENST00000640543 90 ntBASIC-1.74□□□□□ -2.69
LIMS3P0CW19 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 RNU6-508P-201ENST00000363231 103 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 RNU6-309P-201ENST00000364573 106 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.337-201ENST00000365312 102 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORA62.4-201ENST00000365504 151 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORD42B-201ENST00000458893 67 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 AC107027.2-201ENST00000512197 115 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 MIR4308-201ENST00000580634 81 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 AC138207.3-201ENST00000585289 166 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.75□□□□□ -2.69
LIMS3P0CW19 SNORA63.6-201ENST00000364921 119 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 RNY4P28-201ENST00000365281 93 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 Y_RNA.419-201ENST00000384041 102 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 RNU6-588P-201ENST00000410281 105 ntBASIC-1.76□□□□□ -2.69
LIMS3P0CW19 SNORA7.5-201ENST00000410672 110 ntBASIC-1.76□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 211.3 ms