Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR3945-201ENST00000581853 98 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR3140-201ENST00000583685 90 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 AC013244.2-201ENST00000603396 103 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.92□□□□□ -2.1
CCDC39Q9UFE4 MIR377-201ENST00000362145 69 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR101-2-201ENST00000362195 79 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-664P-201ENST00000362381 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-1260P-201ENST00000362944 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-654P-201ENST00000364373 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-997P-201ENST00000384725 107 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR9-2-201ENST00000384838 87 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR1185-1-201ENST00000408598 86 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU4-37P-201ENST00000410214 84 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNA5SP95-201ENST00000410319 137 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 AC093423.1-201ENST00000440817 142 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 snoU13.9-201ENST00000458927 103 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 RNU6-250P-201ENST00000516958 103 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR4696-201ENST00000581431 70 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR3675-201ENST00000583661 73 ntBASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC39Q9UFE4 MIR934-201ENST00000401241 83 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR18B-201ENST00000454574 71 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR2113-201ENST00000459007 91 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-947P-201ENST00000516264 106 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-295P-201ENST00000516901 104 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR548H5-201ENST00000580314 60 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 MIR6845-201ENST00000613182 61 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 U6.100-201ENST00000636230 99 ntBASIC1.9□□□□□ -2.11
CCDC39Q9UFE4 RNU6-681P-201ENST00000364012 104 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU6-580P-201ENST00000365159 107 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 SNORD101-201ENST00000384027 73 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU6-630P-201ENST00000391258 106 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 MIR502-201ENST00000606349 86 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 RNU7-10P-201ENST00000607194 63 ntBASIC1.89□□□□□ -2.11
CCDC39Q9UFE4 MIR337-201ENST00000362281 93 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 SNORD45A-201ENST00000384512 84 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 AC092628.1-201ENST00000436250 252 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 snoU13.15-201ENST00000459407 104 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 AL133373.1-201ENST00000497098 94 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.88□□□□□ -2.11
CCDC39Q9UFE4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 MIR103A2-201ENST00000362154 78 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.56-201ENST00000362798 112 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 RNU6-895P-201ENST00000384125 103 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 MTRNR2L2-201ENST00000604882 87 ntBASIC1.87□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 RNA5SP264-201ENST00000363115 107 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORA25.4-201ENST00000363666 124 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AC097510.1-201ENST00000510945 133 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AC015688.6-201ENST00000577737 104 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORA77B-201ENST00000578179 125 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 MIR8081-201ENST00000611533 95 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 U6.81-201ENST00000612550 106 ntBASIC1.86□□□□□ -2.11
CCDC39Q9UFE4 SNORD45.1-201ENST00000363181 77 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 RNU6-824P-201ENST00000363724 104 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 SNORD115-22-201ENST00000364456 82 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.443-201ENST00000384135 111 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 SNORA24B-201ENST00000384176 131 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 RNU7-185P-201ENST00000459215 60 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 MIR3124-201ENST00000582636 67 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 MIR6082-201ENST00000613604 109 ntBASIC1.85□□□□□ -2.11
CCDC39Q9UFE4 AC023934.1-201ENST00000574529 2389 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 RNU6-499P-201ENST00000365615 107 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SNORA26.9-201ENST00000391322 122 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR1261-201ENST00000408659 82 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 snoU13.21-201ENST00000459368 105 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SNORA25.15-201ENST00000516487 89 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 RNU6-881P-201ENST00000516813 102 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR4255-201ENST00000579351 72 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR4285-201ENST00000581001 85 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR8053-201ENST00000613344 75 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 MIR8063-201ENST00000621930 81 ntBASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC39Q9UFE4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
CCDC39Q9UFE4 RNU6-1052P-201ENST00000411398 104 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 AC097635.1-201ENST00000450678 155 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 snoU13.26-201ENST00000459452 105 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 RNU6-719P-201ENST00000516671 104 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 MIR4422-201ENST00000581938 83 ntBASIC1.83□□□□□ -2.12
CCDC39Q9UFE4 SNORD116-24-201ENST00000384549 92 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 RNU6-935P-201ENST00000410371 100 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.82□□□□□ -2.12
CCDC39Q9UFE4 MIR451A-201ENST00000385059 72 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR599-201ENST00000385069 95 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 RNU1-78P-201ENST00000391248 165 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR1257-201ENST00000408490 117 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 RNU6-765P-201ENST00000516916 99 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 MIR6715A-201ENST00000615929 79 ntBASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC39Q9UFE4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 285 ms