Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR4804-201ENST00000581683 73 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 MIR3202-2-201ENST00000635980 79 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 AC006160.2-201ENST00000637708 154 ntBASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
PTCHD1Q96NR3 MIR1-1-201ENST00000362147 71 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 MIR337-201ENST00000362281 93 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNA5SP327-201ENST00000362494 101 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 SNORA25-201ENST00000384384 134 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC092628.1-201ENST00000436250 252 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC067940.1-201ENST00000458411 300 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU7-195P-201ENST00000458793 62 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU7-102P-201ENST00000458948 62 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 MIR4498-201ENST00000577599 66 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 snoU13.31-201ENST00000607291 104 ntBASIC1.42□□□□□ -2.18
PTCHD1Q96NR3 RNU6-1124P-201ENST00000384169 107 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 MIR519A1-201ENST00000385257 85 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-955P-201ENST00000410497 104 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-1053P-201ENST00000515930 101 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 RNU6-448P-201ENST00000517052 107 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 SNORA31.24-201ENST00000517232 57 ntBASIC1.41□□□□□ -2.18
PTCHD1Q96NR3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
PTCHD1Q96NR3 RNU4-32P-201ENST00000363404 141 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.283-201ENST00000364798 112 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 SNORD26-201ENST00000384147 75 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-524P-201ENST00000384270 107 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-1275P-201ENST00000391087 107 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-466P-201ENST00000391224 103 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU4-62P-201ENST00000410125 130 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU7-56P-201ENST00000458744 62 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-65P-201ENST00000516332 98 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.676-201ENST00000516393 96 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.685-201ENST00000516532 108 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 MIR4536-1-201ENST00000583537 88 ntBASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.4□□□□□ -2.19
PTCHD1Q96NR3 RNU6-228P-201ENST00000362700 106 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 SNORD115-37-201ENST00000363768 82 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 RNU6-535P-201ENST00000384722 107 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 RNU1-119P-201ENST00000391122 165 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR1236-201ENST00000408340 102 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR1827-201ENST00000408549 66 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AC093729.1-201ENST00000513074 128 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.809-201ENST00000516058 95 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 MIR4666B-201ENST00000578142 81 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 AC008608.1-201ENST00000603910 127 ntBASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.437-201ENST00000384113 113 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 RNU6-291P-201ENST00000384720 107 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 MIR520F-201ENST00000384824 87 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.607-201ENST00000410597 98 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 AC138907.6-201ENST00000568401 126 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 AC138869.1-201ENST00000568623 124 ntBASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PTCHD1Q96NR3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-1260P-201ENST00000362944 107 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-957P-201ENST00000363652 99 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU6-787P-201ENST00000384032 107 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 MIR320A-201ENST00000385302 82 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 RNU1-92P-201ENST00000517017 135 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 AL157834.3-201ENST00000615543 103 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.37□□□□□ -2.19
PTCHD1Q96NR3 AC097635.1-201ENST00000450678 155 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNU6-75P-201ENST00000515944 104 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNU7-153P-201ENST00000516455 62 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 ZNF209P-201ENST00000593450 2304 ntBASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
PTCHD1Q96NR3 RNA5SP245-201ENST00000364239 121 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 RNU6-811P-201ENST00000384069 107 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 MIR1255A-201ENST00000408338 113 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 AL359821.1-201ENST00000605519 182 ntBASIC1.35□□□□□ -2.19
PTCHD1Q96NR3 MIR599-201ENST00000385069 95 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 RNU7-95P-201ENST00000459222 64 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 RMST_2.1-201ENST00000617263 136 ntBASIC1.34□□□□□ -2.19
PTCHD1Q96NR3 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
PTCHD1Q96NR3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 SNORA25.8-201ENST00000364831 128 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 Y_RNA.313-201ENST00000365095 103 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 AP1B1P2-201ENST00000416196 106 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 TRDV1-202ENST00000621643 102 ntBASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
PTCHD1Q96NR3 RNU6-652P-201ENST00000365488 107 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR19B1-201ENST00000384829 87 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 SNORD89-201ENST00000390981 114 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 RNA5SP225-201ENST00000410874 135 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AL606490.4-201ENST00000423117 127 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 FABP5P4-201ENST00000437203 171 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AC140658.3-201ENST00000567603 271 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR3064-201ENST00000581130 66 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 AL136317.1-201ENST00000612653 226 ntBASIC1.32□□□□□ -2.2
PTCHD1Q96NR3 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
PTCHD1Q96NR3 RNU6-132P-201ENST00000383863 107 ntBASIC1.31□□□□□ -2.2
PTCHD1Q96NR3 MIR520H-201ENST00000385126 88 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 233.6 ms