Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU4-83P-201ENST00000410863 133 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 AL353813.1-201ENST00000440700 253 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU7-48P-201ENST00000458875 63 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNA5SP255-201ENST00000516370 107 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU7-156P-201ENST00000517214 74 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 DEFB131E-201ENST00000532329 154 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 MIR4491-201ENST00000581087 68 ntBASIC1.12□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1313P-201ENST00000362622 102 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 SNORD114-27-201ENST00000363766 70 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-865P-201ENST00000364772 107 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 SNORD114-22-201ENST00000365423 72 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.448-201ENST00000384185 108 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 AC141557.1-201ENST00000540982 400 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 SNORD92-201ENST00000585078 85 ntBASIC1.11□□□□□ -2.23
LIMCH1Q9UPQ0 MIR450A1-201ENST00000362262 91 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.10-201ENST00000362371 110 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-832P-201ENST00000363319 107 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNA5SP325-201ENST00000363756 130 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.377-201ENST00000365644 108 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 MIR520F-201ENST00000384824 87 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1307P-201ENST00000391012 103 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU1-119P-201ENST00000391122 165 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.601-201ENST00000410500 113 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 AC096949.1-201ENST00000412047 152 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU7-56P-201ENST00000458744 62 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 UBL5P1-201ENST00000507979 193 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-904P-201ENST00000516206 101 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-765P-201ENST00000516916 99 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 MIR3613-201ENST00000579844 87 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 MIR6515-201ENST00000619843 57 ntBASIC1.1□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-403P-201ENST00000363163 104 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1201P-201ENST00000384227 107 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 SNORD105-201ENST00000386910 85 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.588-201ENST00000391254 102 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 RNU6-1194P-201ENST00000516208 104 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 MIR376B-201ENST00000614515 100 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 AL442128.1-201ENST00000615151 90 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 AC022709.1-201ENST00000615967 87 ntBASIC1.09□□□□□ -2.23
LIMCH1Q9UPQ0 Y_RNA.36-201ENST00000362602 112 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-32P-201ENST00000383948 107 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-13P-201ENST00000384248 107 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-12P-201ENST00000384604 107 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.544-201ENST00000384650 113 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-41P-201ENST00000384741 107 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 MIR34C-201ENST00000384831 77 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 MIR590-201ENST00000385008 97 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 AC015818.7-201ENST00000428754 109 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 AC087499.7-201ENST00000441958 109 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 AC096720.1-201ENST00000604441 183 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 MIR6082-201ENST00000613604 109 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 AP001362.1-201ENST00000625165 124 ntBASIC1.08□□□□□ -2.24
LIMCH1Q9UPQ0 RNU4-58P-201ENST00000363192 141 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 RNA5SP133-201ENST00000363368 119 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 SNORD38.1-201ENST00000363863 68 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.495-201ENST00000384435 112 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 SNORD38.2-201ENST00000384470 69 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 SCARNA23-201ENST00000516060 130 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-537P-201ENST00000517277 103 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 AC138749.4-201ENST00000563970 127 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.818-201ENST00000618813 71 ntBASIC1.07□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.119-201ENST00000363301 96 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 SNORA19.1-201ENST00000410656 129 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 RNU7-102P-201ENST00000458948 62 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-1006P-201ENST00000516998 103 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 MIR8066-201ENST00000617280 78 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 U6.109-201ENST00000636749 87 ntBASIC1.06□□□□□ -2.24
LIMCH1Q9UPQ0 SNORA72.6-201ENST00000384520 129 ntBASIC1.05□□□□□ -2.24
LIMCH1Q9UPQ0 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-168P-201ENST00000516189 101 ntBASIC1.05□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-90P-201ENST00000606352 106 ntBASIC1.05□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.13-201ENST00000362403 112 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.42-201ENST00000362660 108 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.93-201ENST00000363066 109 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 SNORD45B-201ENST00000364617 72 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 RNA5SP89-201ENST00000410300 108 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 AC004941.2-201ENST00000427009 228 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 RPL39P28-201ENST00000465655 155 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-109P-201ENST00000516364 107 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-184P-201ENST00000516514 107 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 AP003327.1-201ENST00000529684 127 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 MIR4500-201ENST00000579472 76 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 AP001318.4-201ENST00000616637 121 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 PVT1_3.1-201ENST00000620853 95 ntBASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.247-201ENST00000364500 92 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 RNU6-1187P-201ENST00000364771 110 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 MIR598-201ENST00000384868 97 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 MIR532-201ENST00000385025 91 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 MIR520H-201ENST00000385126 88 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 Y_RNA.659-201ENST00000515994 113 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 MTND5P40-201ENST00000559945 246 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 AC090897.1-201ENST00000580909 226 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 MIR4439-201ENST00000583746 80 ntBASIC1.03□□□□□ -2.24
LIMCH1Q9UPQ0 HSBP1P2-201ENST00000299671 229 ntBASIC1.02□□□□□ -2.25
LIMCH1Q9UPQ0 RNU6-170P-201ENST00000362832 104 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 246.8 ms