Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.611-201ENST00000410682 108 ntBASIC1.58□□□□□ -2.16
RNF4P78317 RNU7-90P-201ENST00000459216 62 ntBASIC1.58□□□□□ -2.16
RNF4P78317 MIR502-201ENST00000606349 86 ntBASIC1.58□□□□□ -2.16
RNF4P78317 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
RNF4P78317 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
RNF4P78317 MIR101-2-201ENST00000362195 79 ntBASIC1.57□□□□□ -2.16
RNF4P78317 Y_RNA.4-201ENST00000362333 112 ntBASIC1.57□□□□□ -2.16
RNF4P78317 SNORD115-27-201ENST00000364430 82 ntBASIC1.57□□□□□ -2.16
RNF4P78317 MIR222-201ENST00000384992 110 ntBASIC1.57□□□□□ -2.16
RNF4P78317 MIR125B2-201ENST00000385128 89 ntBASIC1.57□□□□□ -2.16
RNF4P78317 SNORD100-201ENST00000408573 76 ntBASIC1.57□□□□□ -2.16
RNF4P78317 RPS26P5-201ENST00000418544 335 ntBASIC1.57□□□□□ -2.16
RNF4P78317 SNORA70.22-201ENST00000517160 124 ntBASIC1.57□□□□□ -2.16
RNF4P78317 RNU7-156P-201ENST00000517214 74 ntBASIC1.57□□□□□ -2.16
RNF4P78317 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.57□□□□□ -2.16
RNF4P78317 MIR4255-201ENST00000579351 72 ntBASIC1.57□□□□□ -2.16
RNF4P78317 MIR4676-201ENST00000583078 72 ntBASIC1.57□□□□□ -2.16
RNF4P78317 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
RNF4P78317 RNA5SP190-201ENST00000365222 118 ntBASIC1.56□□□□□ -2.16
RNF4P78317 RNU6-242P-201ENST00000384359 107 ntBASIC1.56□□□□□ -2.16
RNF4P78317 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.56□□□□□ -2.16
RNF4P78317 RNU6-1194P-201ENST00000516208 104 ntBASIC1.56□□□□□ -2.16
RNF4P78317 MIR5588-201ENST00000581890 63 ntBASIC1.56□□□□□ -2.16
RNF4P78317 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.56□□□□□ -2.16
RNF4P78317 RNU6-509P-201ENST00000363519 107 ntBASIC1.55□□□□□ -2.16
RNF4P78317 RNU6-1276P-201ENST00000365372 104 ntBASIC1.55□□□□□ -2.16
RNF4P78317 SNORD63B-201ENST00000411005 70 ntBASIC1.55□□□□□ -2.16
RNF4P78317 AL161932.1-201ENST00000437408 146 ntBASIC1.55□□□□□ -2.16
RNF4P78317 RNU7-106P-201ENST00000459514 67 ntBASIC1.55□□□□□ -2.16
RNF4P78317 MIR4781-201ENST00000585250 76 ntBASIC1.55□□□□□ -2.16
RNF4P78317 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.55□□□□□ -2.16
RNF4P78317 AL353997.5-201ENST00000618886 171 ntBASIC1.55□□□□□ -2.16
RNF4P78317 MIR548BB-201ENST00000626714 66 ntBASIC1.55□□□□□ -2.16
RNF4P78317 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
RNF4P78317 RNU6-633P-201ENST00000362612 103 ntBASIC1.54□□□□□ -2.16
RNF4P78317 Y_RNA.42-201ENST00000362660 108 ntBASIC1.54□□□□□ -2.16
RNF4P78317 RNU1-17P-201ENST00000363022 152 ntBASIC1.54□□□□□ -2.16
RNF4P78317 SNORD48-201ENST00000364953 64 ntBASIC1.54□□□□□ -2.16
RNF4P78317 RNU6-979P-201ENST00000383896 107 ntBASIC1.54□□□□□ -2.16
RNF4P78317 RNU6-364P-201ENST00000384387 107 ntBASIC1.54□□□□□ -2.16
RNF4P78317 RNU6-1254P-201ENST00000391266 104 ntBASIC1.54□□□□□ -2.16
RNF4P78317 snoU13.11-201ENST00000459219 104 ntBASIC1.54□□□□□ -2.16
RNF4P78317 MIR3124-201ENST00000582636 67 ntBASIC1.54□□□□□ -2.16
RNF4P78317 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.54□□□□□ -2.16
RNF4P78317 RNA5SP327-201ENST00000362494 101 ntBASIC1.53□□□□□ -2.16
RNF4P78317 RNU6-369P-201ENST00000362515 102 ntBASIC1.53□□□□□ -2.16
RNF4P78317 Y_RNA.536-201ENST00000384621 113 ntBASIC1.53□□□□□ -2.16
RNF4P78317 RNU7-85P-201ENST00000458851 63 ntBASIC1.53□□□□□ -2.16
RNF4P78317 SNORD13-201ENST00000459299 104 ntBASIC1.53□□□□□ -2.16
RNF4P78317 TRAJ51-201ENST00000504127 63 ntBASIC1.53□□□□□ -2.16
RNF4P78317 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.53□□□□□ -2.16
RNF4P78317 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
RNF4P78317 SNORD36A-201ENST00000362874 73 ntBASIC1.52□□□□□ -2.17
RNF4P78317 RNA5SP99-201ENST00000364020 114 ntBASIC1.52□□□□□ -2.17
RNF4P78317 Y_RNA.219-201ENST00000364232 113 ntBASIC1.52□□□□□ -2.17
RNF4P78317 MIR100-201ENST00000385259 80 ntBASIC1.52□□□□□ -2.17
RNF4P78317 RNU6-243P-201ENST00000391140 107 ntBASIC1.52□□□□□ -2.17
RNF4P78317 Y_RNA.648-201ENST00000459455 110 ntBASIC1.52□□□□□ -2.17
RNF4P78317 RNU6-977P-201ENST00000516411 103 ntBASIC1.52□□□□□ -2.17
RNF4P78317 Y_RNA.697-201ENST00000516776 113 ntBASIC1.52□□□□□ -2.17
RNF4P78317 AP003327.1-201ENST00000529684 127 ntBASIC1.52□□□□□ -2.17
RNF4P78317 AL512598.1-201ENST00000610158 273 ntBASIC1.52□□□□□ -2.17
RNF4P78317 RNU4-32P-201ENST00000363404 141 ntBASIC1.51□□□□□ -2.17
RNF4P78317 MIR635-201ENST00000384830 98 ntBASIC1.51□□□□□ -2.17
RNF4P78317 RNU6-482P-201ENST00000391068 107 ntBASIC1.51□□□□□ -2.17
RNF4P78317 MIR938-201ENST00000401216 83 ntBASIC1.51□□□□□ -2.17
RNF4P78317 RNU7-195P-201ENST00000458793 62 ntBASIC1.51□□□□□ -2.17
RNF4P78317 SNORD4B-201ENST00000459083 72 ntBASIC1.51□□□□□ -2.17
RNF4P78317 RNU6-765P-201ENST00000516916 99 ntBASIC1.51□□□□□ -2.17
RNF4P78317 MIR4769-201ENST00000584126 77 ntBASIC1.51□□□□□ -2.17
RNF4P78317 AL645939.4-201ENST00000604495 135 ntBASIC1.51□□□□□ -2.17
RNF4P78317 AL157834.3-201ENST00000615543 103 ntBASIC1.51□□□□□ -2.17
RNF4P78317 AC027335.2-201ENST00000624030 375 ntBASIC1.51□□□□□ -2.17
RNF4P78317 RNU6-1124P-201ENST00000384169 107 ntBASIC1.5□□□□□ -2.17
RNF4P78317 SNORD78.1-201ENST00000390866 65 ntBASIC1.5□□□□□ -2.17
RNF4P78317 RNU7-102P-201ENST00000458948 62 ntBASIC1.5□□□□□ -2.17
RNF4P78317 MIR548H5-201ENST00000580314 60 ntBASIC1.5□□□□□ -2.17
RNF4P78317 MIR4804-201ENST00000581683 73 ntBASIC1.5□□□□□ -2.17
RNF4P78317 AC008608.1-201ENST00000603910 127 ntBASIC1.5□□□□□ -2.17
RNF4P78317 AC006160.2-201ENST00000637708 154 ntBASIC1.5□□□□□ -2.17
RNF4P78317 RNU6-228P-201ENST00000362700 106 ntBASIC1.49□□□□□ -2.17
RNF4P78317 RNA5SP363-201ENST00000365072 115 ntBASIC1.49□□□□□ -2.17
RNF4P78317 Y_RNA.426-201ENST00000384068 113 ntBASIC1.49□□□□□ -2.17
RNF4P78317 SNORA25-201ENST00000384384 134 ntBASIC1.49□□□□□ -2.17
RNF4P78317 MIR519C-201ENST00000385053 87 ntBASIC1.49□□□□□ -2.17
RNF4P78317 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.49□□□□□ -2.17
RNF4P78317 RNU6-955P-201ENST00000410497 104 ntBASIC1.49□□□□□ -2.17
RNF4P78317 AC092628.1-201ENST00000436250 252 ntBASIC1.49□□□□□ -2.17
RNF4P78317 AC002429.1-201ENST00000437672 148 ntBASIC1.49□□□□□ -2.17
RNF4P78317 SNORD92-201ENST00000585078 85 ntBASIC1.49□□□□□ -2.17
RNF4P78317 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.49□□□□□ -2.17
RNF4P78317 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
RNF4P78317 Y_RNA.56-201ENST00000362798 112 ntBASIC1.48□□□□□ -2.17
RNF4P78317 RNU6-524P-201ENST00000384270 107 ntBASIC1.48□□□□□ -2.17
RNF4P78317 SNORD12-201ENST00000391002 90 ntBASIC1.48□□□□□ -2.17
RNF4P78317 SNORA67.5-201ENST00000391036 107 ntBASIC1.48□□□□□ -2.17
RNF4P78317 AC067940.1-201ENST00000458411 300 ntBASIC1.48□□□□□ -2.17
RNF4P78317 RNU6-237P-201ENST00000515985 71 ntBASIC1.48□□□□□ -2.17
RNF4P78317 MIR1-1-201ENST00000362147 71 ntBASIC1.47□□□□□ -2.17
RNF4P78317 RNU6-957P-201ENST00000363652 99 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 250 ms