Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 uc_338.20-201ENST00000621563 178 ntBASIC1.98□□□□□ -2.09
RFX1P22670 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.98□□□□□ -2.09
RFX1P22670 RNU6-228P-201ENST00000362700 106 ntBASIC1.97□□□□□ -2.09
RFX1P22670 RNU6-1125P-201ENST00000363601 107 ntBASIC1.97□□□□□ -2.09
RFX1P22670 RNU6-497P-201ENST00000365316 104 ntBASIC1.97□□□□□ -2.09
RFX1P22670 RNU6-480P-201ENST00000384332 107 ntBASIC1.97□□□□□ -2.09
RFX1P22670 SNORD116-22-201ENST00000384430 92 ntBASIC1.97□□□□□ -2.09
RFX1P22670 RNU6-402P-201ENST00000410678 103 ntBASIC1.97□□□□□ -2.09
RFX1P22670 SNORA25.16-201ENST00000516741 121 ntBASIC1.97□□□□□ -2.09
RFX1P22670 MIR8081-201ENST00000611533 95 ntBASIC1.97□□□□□ -2.09
RFX1P22670 RNU6-1124P-201ENST00000384169 107 ntBASIC1.96□□□□□ -2.1
RFX1P22670 MIR181B2-201ENST00000385004 89 ntBASIC1.96□□□□□ -2.1
RFX1P22670 MIR518E-201ENST00000385252 88 ntBASIC1.96□□□□□ -2.1
RFX1P22670 MIR1257-201ENST00000408490 117 ntBASIC1.96□□□□□ -2.1
RFX1P22670 AC003989.2-201ENST00000440224 169 ntBASIC1.96□□□□□ -2.1
RFX1P22670 SNRPGP12-201ENST00000449481 213 ntBASIC1.96□□□□□ -2.1
RFX1P22670 RNU6-531P-201ENST00000516694 104 ntBASIC1.96□□□□□ -2.1
RFX1P22670 RNU6-267P-201ENST00000516714 103 ntBASIC1.96□□□□□ -2.1
RFX1P22670 MIR4448-201ENST00000584360 86 ntBASIC1.96□□□□□ -2.1
RFX1P22670 RNU6-403P-201ENST00000363163 104 ntBASIC1.95□□□□□ -2.1
RFX1P22670 RNU4-58P-201ENST00000363192 141 ntBASIC1.95□□□□□ -2.1
RFX1P22670 Y_RNA.224-201ENST00000364308 111 ntBASIC1.95□□□□□ -2.1
RFX1P22670 RNU6-53P-201ENST00000365367 106 ntBASIC1.95□□□□□ -2.1
RFX1P22670 RNU6-1276P-201ENST00000365372 104 ntBASIC1.95□□□□□ -2.1
RFX1P22670 RNU6-571P-201ENST00000384128 107 ntBASIC1.95□□□□□ -2.1
RFX1P22670 BX276092.1-201ENST00000427368 251 ntBASIC1.95□□□□□ -2.1
RFX1P22670 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.95□□□□□ -2.1
RFX1P22670 RNU6-219P-201ENST00000364728 107 ntBASIC1.94□□□□□ -2.1
RFX1P22670 RNU6-242P-201ENST00000384359 107 ntBASIC1.94□□□□□ -2.1
RFX1P22670 RNU4-83P-201ENST00000410863 133 ntBASIC1.94□□□□□ -2.1
RFX1P22670 RNA5SP225-201ENST00000410874 135 ntBASIC1.94□□□□□ -2.1
RFX1P22670 RPS26P5-201ENST00000418544 335 ntBASIC1.94□□□□□ -2.1
RFX1P22670 RNU6-850P-201ENST00000516934 103 ntBASIC1.94□□□□□ -2.1
RFX1P22670 MIR502-201ENST00000606349 86 ntBASIC1.94□□□□□ -2.1
RFX1P22670 MIR3202-2-201ENST00000635980 79 ntBASIC1.94□□□□□ -2.1
RFX1P22670 MIR125B2-201ENST00000385128 89 ntBASIC1.93□□□□□ -2.1
RFX1P22670 MIR1255A-201ENST00000408338 113 ntBASIC1.93□□□□□ -2.1
RFX1P22670 snoU13.18-201ENST00000459483 104 ntBASIC1.93□□□□□ -2.1
RFX1P22670 MIR4419B-201ENST00000577260 68 ntBASIC1.93□□□□□ -2.1
RFX1P22670 MIR4771-2-201ENST00000577758 74 ntBASIC1.93□□□□□ -2.1
RFX1P22670 MIR4771-1-201ENST00000582617 74 ntBASIC1.93□□□□□ -2.1
RFX1P22670 AC020891.4-201ENST00000605745 93 ntBASIC1.93□□□□□ -2.1
RFX1P22670 BX248123.2-201ENST00000606318 124 ntBASIC1.93□□□□□ -2.1
RFX1P22670 RNU6-979P-201ENST00000383896 107 ntBASIC1.92□□□□□ -2.1
RFX1P22670 SNORA72.6-201ENST00000384520 129 ntBASIC1.92□□□□□ -2.1
RFX1P22670 RNU4-62P-201ENST00000410125 130 ntBASIC1.92□□□□□ -2.1
RFX1P22670 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.92□□□□□ -2.1
RFX1P22670 AL513043.2-201ENST00000573941 143 ntBASIC1.92□□□□□ -2.1
RFX1P22670 MIR4668-201ENST00000582284 70 ntBASIC1.92□□□□□ -2.1
RFX1P22670 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
RFX1P22670 RNU6-787P-201ENST00000384032 107 ntBASIC1.91□□□□□ -2.1
RFX1P22670 RNY1P4-201ENST00000384595 115 ntBASIC1.91□□□□□ -2.1
RFX1P22670 MIR9-3-201ENST00000385084 90 ntBASIC1.91□□□□□ -2.1
RFX1P22670 Y_RNA.620-201ENST00000411009 88 ntBASIC1.91□□□□□ -2.1
RFX1P22670 AC015818.7-201ENST00000428754 109 ntBASIC1.91□□□□□ -2.1
RFX1P22670 AC087499.7-201ENST00000441958 109 ntBASIC1.91□□□□□ -2.1
RFX1P22670 RNU7-40P-201ENST00000516397 64 ntBASIC1.91□□□□□ -2.1
RFX1P22670 RNU6-765P-201ENST00000516916 99 ntBASIC1.91□□□□□ -2.1
RFX1P22670 MIR5588-201ENST00000581890 63 ntBASIC1.91□□□□□ -2.1
RFX1P22670 MIR6082-201ENST00000613604 109 ntBASIC1.91□□□□□ -2.1
RFX1P22670 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.91□□□□□ -2.1
RFX1P22670 MIR8066-201ENST00000617280 78 ntBASIC1.91□□□□□ -2.1
RFX1P22670 AC025521.1-201ENST00000621624 286 ntBASIC1.91□□□□□ -2.1
RFX1P22670 SNORA25-201ENST00000384384 134 ntBASIC1.9□□□□□ -2.11
RFX1P22670 SNORA67.5-201ENST00000391036 107 ntBASIC1.9□□□□□ -2.11
RFX1P22670 AP1B1P2-201ENST00000416196 106 ntBASIC1.9□□□□□ -2.11
RFX1P22670 RNA5SP395-201ENST00000516567 118 ntBASIC1.9□□□□□ -2.11
RFX1P22670 AL512598.1-201ENST00000610158 273 ntBASIC1.9□□□□□ -2.11
RFX1P22670 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
RFX1P22670 SNORD48-201ENST00000364953 64 ntBASIC1.89□□□□□ -2.11
RFX1P22670 AC002429.1-201ENST00000437672 148 ntBASIC1.89□□□□□ -2.11
RFX1P22670 Y_RNA.13-201ENST00000362403 112 ntBASIC1.88□□□□□ -2.11
RFX1P22670 Y_RNA.57-201ENST00000362806 113 ntBASIC1.88□□□□□ -2.11
RFX1P22670 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
RFX1P22670 MIR4255-201ENST00000579351 72 ntBASIC1.88□□□□□ -2.11
RFX1P22670 MIR4676-201ENST00000583078 72 ntBASIC1.88□□□□□ -2.11
RFX1P22670 AC013244.2-201ENST00000603396 103 ntBASIC1.88□□□□□ -2.11
RFX1P22670 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
RFX1P22670 RNA5SP327-201ENST00000362494 101 ntBASIC1.87□□□□□ -2.11
RFX1P22670 SNORD26-201ENST00000384147 75 ntBASIC1.87□□□□□ -2.11
RFX1P22670 RNU6-994P-201ENST00000410507 111 ntBASIC1.87□□□□□ -2.11
RFX1P22670 RNU7-171P-201ENST00000459581 62 ntBASIC1.87□□□□□ -2.11
RFX1P22670 RNU7-156P-201ENST00000517214 74 ntBASIC1.87□□□□□ -2.11
RFX1P22670 RNU6-369P-201ENST00000362515 102 ntBASIC1.86□□□□□ -2.11
RFX1P22670 Y_RNA.191-201ENST00000363972 113 ntBASIC1.86□□□□□ -2.11
RFX1P22670 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
RFX1P22670 MIR4666B-201ENST00000578142 81 ntBASIC1.86□□□□□ -2.11
RFX1P22670 SNORD92-201ENST00000585078 85 ntBASIC1.86□□□□□ -2.11
RFX1P22670 AC027335.2-201ENST00000624030 375 ntBASIC1.86□□□□□ -2.11
RFX1P22670 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
RFX1P22670 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
RFX1P22670 Y_RNA.313-201ENST00000365095 103 ntBASIC1.85□□□□□ -2.11
RFX1P22670 Y_RNA.437-201ENST00000384113 113 ntBASIC1.85□□□□□ -2.11
RFX1P22670 MIR19B1-201ENST00000384829 87 ntBASIC1.85□□□□□ -2.11
RFX1P22670 MIR489-201ENST00000384923 84 ntBASIC1.85□□□□□ -2.11
RFX1P22670 Y_RNA.609-201ENST00000410669 89 ntBASIC1.85□□□□□ -2.11
RFX1P22670 Y_RNA.611-201ENST00000410682 108 ntBASIC1.85□□□□□ -2.11
RFX1P22670 SNORD53B-201ENST00000577887 78 ntBASIC1.85□□□□□ -2.11
RFX1P22670 MIR101-2-201ENST00000362195 79 ntBASIC1.84□□□□□ -2.11
RFX1P22670 Y_RNA.42-201ENST00000362660 108 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 270.6 ms