Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL512310.8-201ENST00000550183 120 ntBASIC1.63□□□□□ -2.15
COL6A1P12109 MIR6740-201ENST00000618268 113 ntBASIC1.63□□□□□ -2.15
COL6A1P12109 AC012676.2-201ENST00000619258 186 ntBASIC1.63□□□□□ -2.15
COL6A1P12109 MIR6516-201ENST00000630554 81 ntBASIC1.63□□□□□ -2.15
COL6A1P12109 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.63□□□□□ -2.15
COL6A1P12109 RNU6-1125P-201ENST00000363601 107 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 RNU6-1244P-201ENST00000363614 108 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 RNA5SP325-201ENST00000363756 130 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 Y_RNA.190-201ENST00000363964 101 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 SNORD26-201ENST00000384147 75 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 RNU6-480P-201ENST00000384332 107 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 RNU6-613P-201ENST00000410412 108 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 snoU13.25-201ENST00000458945 104 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 MIR6078-201ENST00000611069 100 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 SEPT14P17-201ENST00000617978 177 ntBASIC1.62□□□□□ -2.15
COL6A1P12109 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
COL6A1P12109 HSBP1P2-201ENST00000299671 229 ntBASIC1.61□□□□□ -2.15
COL6A1P12109 Y_RNA.173-201ENST00000363776 113 ntBASIC1.61□□□□□ -2.15
COL6A1P12109 MIR1185-1-201ENST00000408598 86 ntBASIC1.61□□□□□ -2.15
COL6A1P12109 MIR3664-201ENST00000579074 99 ntBASIC1.61□□□□□ -2.15
COL6A1P12109 MIR30D-201ENST00000362283 70 ntBASIC1.6□□□□□ -2.15
COL6A1P12109 RNA5SP173-201ENST00000364857 136 ntBASIC1.6□□□□□ -2.15
COL6A1P12109 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
COL6A1P12109 MIR6515-201ENST00000619843 57 ntBASIC1.6□□□□□ -2.15
COL6A1P12109 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.59□□□□□ -2.15
COL6A1P12109 RNU7-40P-201ENST00000516397 64 ntBASIC1.59□□□□□ -2.15
COL6A1P12109 AC138749.4-201ENST00000563970 127 ntBASIC1.59□□□□□ -2.15
COL6A1P12109 U6.109-201ENST00000636749 87 ntBASIC1.59□□□□□ -2.15
COL6A1P12109 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A1P12109 RNU6-675P-201ENST00000384236 104 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 RNU6-242P-201ENST00000384359 107 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 RNU6-1152P-201ENST00000384576 107 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 RNU6-939P-201ENST00000384634 107 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 MIR1304-201ENST00000408243 91 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 RNU6-402P-201ENST00000410678 103 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 MIR4500-201ENST00000579472 76 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 AC090897.1-201ENST00000580909 226 ntBASIC1.58□□□□□ -2.16
COL6A1P12109 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
COL6A1P12109 RNA5SP133-201ENST00000363368 119 ntBASIC1.57□□□□□ -2.16
COL6A1P12109 MIR520E-201ENST00000384867 87 ntBASIC1.57□□□□□ -2.16
COL6A1P12109 MIR150-201ENST00000385048 84 ntBASIC1.57□□□□□ -2.16
COL6A1P12109 MIR18B-201ENST00000454574 71 ntBASIC1.57□□□□□ -2.16
COL6A1P12109 MIR4668-201ENST00000582284 70 ntBASIC1.57□□□□□ -2.16
COL6A1P12109 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL6A1P12109 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL6A1P12109 Y_RNA.119-201ENST00000363301 96 ntBASIC1.56□□□□□ -2.16
COL6A1P12109 RNU6-654P-201ENST00000364373 107 ntBASIC1.56□□□□□ -2.16
COL6A1P12109 RNU6-580P-201ENST00000365159 107 ntBASIC1.56□□□□□ -2.16
COL6A1P12109 SNORA2B-201ENST00000384583 137 ntBASIC1.56□□□□□ -2.16
COL6A1P12109 AC022137.1-201ENST00000483735 151 ntBASIC1.56□□□□□ -2.16
COL6A1P12109 RNU6-571P-201ENST00000384128 107 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 MIR222-201ENST00000384992 110 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 MIR181B2-201ENST00000385004 89 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 RNA5SP95-201ENST00000410319 137 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 RNU6-165P-201ENST00000517170 99 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 AP003327.1-201ENST00000529684 127 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 MIR3660-201ENST00000584845 100 ntBASIC1.55□□□□□ -2.16
COL6A1P12109 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL6A1P12109 AC008163.1-202ENST00000636004 2889 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 Y_RNA.219-201ENST00000364232 113 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 RNU6-573P-201ENST00000383938 106 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 RNY1P4-201ENST00000384595 115 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
COL6A1P12109 SNORD93-201ENST00000408813 74 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 Y_RNA.609-201ENST00000410669 89 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 Y_RNA.620-201ENST00000411009 88 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 RNU6-1054P-201ENST00000411293 104 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 SNRPGP12-201ENST00000449481 213 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 AL513043.2-201ENST00000573941 143 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 MIR8066-201ENST00000617280 78 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 MIR1245B-201ENST00000636115 69 ntBASIC1.54□□□□□ -2.16
COL6A1P12109 Y_RNA.57-201ENST00000362806 113 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 RNU6-219P-201ENST00000364728 107 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 RNU6-592P-201ENST00000411333 103 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 RPS29P1-201ENST00000465274 159 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 AC023790.1-201ENST00000482174 347 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 RNU6-1223P-201ENST00000517124 104 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 uc_338.6-201ENST00000613544 171 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 MIR6767-201ENST00000637302 66 ntBASIC1.53□□□□□ -2.16
COL6A1P12109 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL6A1P12109 RNA5SP327-201ENST00000362494 101 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 RNU4-58P-201ENST00000363192 141 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 Y_RNA.330-201ENST00000365230 109 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 AL161932.1-201ENST00000437408 146 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 AC004223.1-201ENST00000479840 271 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 AC025521.1-201ENST00000621624 286 ntBASIC1.52□□□□□ -2.17
COL6A1P12109 MIR598-201ENST00000384868 97 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 AC048334.1-201ENST00000477975 159 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 RNU6-267P-201ENST00000516714 103 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 RNU6-850P-201ENST00000516934 103 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 MIR6788-201ENST00000618842 66 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 MIR3202-2-201ENST00000635980 79 ntBASIC1.51□□□□□ -2.17
COL6A1P12109 Y_RNA.73-201ENST00000362910 113 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 SNORD113.3-201ENST00000364630 78 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 RNU1-36P-201ENST00000365130 165 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 RNU6-497P-201ENST00000365316 104 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 RNU6-1276P-201ENST00000365372 104 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 SNORA72.6-201ENST00000384520 129 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 MIR618-201ENST00000385287 98 ntBASIC1.5□□□□□ -2.17
COL6A1P12109 SNORA40.6-201ENST00000391153 128 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms