Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RN7SL499P-201ENST00000481141 276 ntBASIC2.82□□□□□ -1.96
VPS9D1Q9Y2B5 SNORA31.17-201ENST00000516953 127 ntBASIC2.82□□□□□ -1.96
VPS9D1Q9Y2B5 MIR6516-201ENST00000630554 81 ntBASIC2.82□□□□□ -1.96
VPS9D1Q9Y2B5 Z82195.2-201ENST00000612348 18351 ntBASIC2.82□□□□□ -1.96
VPS9D1Q9Y2B5 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VPS9D1Q9Y2B5 RNA5SP259-201ENST00000365541 109 ntBASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 MIR599-201ENST00000385069 95 ntBASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 RPL23AP94-201ENST00000512518 302 ntBASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 RNU6-922P-201ENST00000516753 99 ntBASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 MIR6733-201ENST00000635723 61 ntBASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS9D1Q9Y2B5 AL596028.1-201ENST00000326971 197 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 COTL1P1-201ENST00000422309 375 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 RPS29P6-201ENST00000438196 145 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 UBBP3-201ENST00000445497 241 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 Z96811.1-201ENST00000445880 108 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 AL078603.1-201ENST00000603824 313 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 MIR6082-201ENST00000613604 109 ntBASIC2.8□□□□□ -1.96
VPS9D1Q9Y2B5 MAPK10-266ENST00000641066 6555 ntBASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 UBE2DNL-203ENST00000474922 222 ntBASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 SCARNA21.1-201ENST00000515996 128 ntBASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 RNU6-1265P-201ENST00000516342 103 ntBASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS9D1Q9Y2B5 AC023934.1-201ENST00000574529 2389 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 Y_RNA.13-201ENST00000362403 112 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 EEF1A1P41-201ENST00000414667 207 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 AC138907.6-201ENST00000568401 126 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 AC138869.1-201ENST00000568623 124 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 AC015688.6-201ENST00000577737 104 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 SNRPGP19-201ENST00000603826 189 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 AC103810.8-201ENST00000607347 118 ntBASIC2.78□□□□□ -1.96
VPS9D1Q9Y2B5 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.78□□□□□ -1.97
VPS9D1Q9Y2B5 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 SNORD56.5-201ENST00000364281 72 ntBASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 RNU6-580P-201ENST00000365159 107 ntBASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 MIR513A1-201ENST00000385138 129 ntBASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS9D1Q9Y2B5 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VPS9D1Q9Y2B5 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS9D1Q9Y2B5 RNU7-185P-201ENST00000459215 60 ntBASIC2.76□□□□□ -1.97
VPS9D1Q9Y2B5 MIR4298-201ENST00000584380 73 ntBASIC2.76□□□□□ -1.97
VPS9D1Q9Y2B5 Evf-2_5p.1-201ENST00000614213 142 ntBASIC2.76□□□□□ -1.97
VPS9D1Q9Y2B5 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 SNORD113-4-201ENST00000364802 75 ntBASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 SNORD75.2-201ENST00000408784 58 ntBASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 RNU6-765P-201ENST00000516916 99 ntBASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 AC073869.9-201ENST00000641610 120 ntBASIC2.75□□□□□ -1.97
VPS9D1Q9Y2B5 MIR1257-201ENST00000408490 117 ntBASIC2.74□□□□□ -1.97
VPS9D1Q9Y2B5 RNU6-1039P-201ENST00000383931 107 ntBASIC2.73□□□□□ -1.97
VPS9D1Q9Y2B5 RNA5SP95-201ENST00000410319 137 ntBASIC2.73□□□□□ -1.97
VPS9D1Q9Y2B5 snoU13.25-201ENST00000458945 104 ntBASIC2.73□□□□□ -1.97
VPS9D1Q9Y2B5 RNU6-287P-201ENST00000516230 98 ntBASIC2.73□□□□□ -1.97
VPS9D1Q9Y2B5 MIR3938-201ENST00000582157 103 ntBASIC2.73□□□□□ -1.97
VPS9D1Q9Y2B5 Y_RNA.500-201ENST00000384466 111 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 MIR1185-1-201ENST00000408598 86 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 RNA5SP21-201ENST00000410917 96 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 RNU7-24P-201ENST00000458867 62 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 AL133373.1-201ENST00000497098 94 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 AP003716.2-201ENST00000528260 108 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 GHRLOS.1-201ENST00000610995 70 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 MIR7106-201ENST00000612419 65 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 MIR6509-201ENST00000614603 85 ntBASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS9D1Q9Y2B5 AL138827.1-201ENST00000402666 306 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 AL161935.2-201ENST00000414627 60 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 AC087499.2-201ENST00000432861 149 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 RNU6-947P-201ENST00000516264 106 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 MIR4672-201ENST00000583126 81 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.71□□□□□ -1.98
VPS9D1Q9Y2B5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 VTRNA1-1-201ENST00000363120 99 ntBASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 MIR9-1-201ENST00000385198 89 ntBASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 RNA5SP299-201ENST00000391203 116 ntBASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 RNU6-122P-201ENST00000516818 107 ntBASIC2.7□□□□□ -1.98
VPS9D1Q9Y2B5 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 MIR103A2-201ENST00000362154 78 ntBASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 SNORA5B-201ENST00000363786 132 ntBASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 SNORD115-44-201ENST00000365391 82 ntBASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 RPL23AP42-201ENST00000471152 471 ntBASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS9D1Q9Y2B5 AC080100.1-201ENST00000624239 5356 ntBASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 RNU6-645P-201ENST00000364649 106 ntBASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
VPS9D1Q9Y2B5 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms