Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNA5SP255-201ENST00000516370 107 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 AC007012.1-201ENST00000567192 175 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 MIR4771-2-201ENST00000577758 74 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 MIR4771-1-201ENST00000582617 74 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 SNORD92-201ENST00000585078 85 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 U6.90-201ENST00000614007 104 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 U6.70-201ENST00000620287 104 ntBASIC1.02□□□□□ -2.25
VPS4AQ9UN37 SNORD115-35-201ENST00000365122 82 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.362-201ENST00000365518 110 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 RNU6-1144P-201ENST00000384247 104 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 MIR548A3-201ENST00000385297 97 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
VPS4AQ9UN37 RNU6-994P-201ENST00000410507 111 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 RPL39P34-201ENST00000477141 156 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 RNA5SP436-201ENST00000516020 115 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 MIR4804-201ENST00000581683 73 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 AC023934.1-201ENST00000574529 2389 ntBASIC1.01□□□□□ -2.25
VPS4AQ9UN37 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.273-201ENST00000364703 102 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.281-201ENST00000364774 94 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.291-201ENST00000364886 113 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 RNU6-1307P-201ENST00000391012 103 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1□□□□□ -2.25
VPS4AQ9UN37 AC067940.1-201ENST00000458411 300 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 UBL5P1-201ENST00000507979 193 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 RNU7-2P-201ENST00000516096 62 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 MIR4491-201ENST00000581087 68 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1□□□□□ -2.25
VPS4AQ9UN37 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 MIR1255B1-201ENST00000636325 63 ntBASIC1□□□□□ -2.25
VPS4AQ9UN37 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
VPS4AQ9UN37 RNU6-363P-201ENST00000362895 105 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 RNY1P2-201ENST00000364820 117 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 RNU6-476P-201ENST00000384726 107 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 MIR548A1-201ENST00000385041 97 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 RNU6-1321P-201ENST00000390905 107 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 MIR1257-201ENST00000408490 117 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 RNU6-1064P-201ENST00000410626 104 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 AC015818.7-201ENST00000428754 109 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 AC087499.7-201ENST00000441958 109 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 MIR8066-201ENST00000617280 78 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 AL035470.1-201ENST00000622571 220 ntBASIC0.99□□□□□ -2.25
VPS4AQ9UN37 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.99□□□□□ -2.25
VPS4AQ9UN37 AL589743.1-201ENST00000551932 2712 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.85-201ENST00000363014 111 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.549-201ENST00000384657 102 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 MIR942-201ENST00000401111 86 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 MIR938-201ENST00000401216 83 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 SNORD93-201ENST00000408813 74 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.629-201ENST00000411368 105 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 AC138749.4-201ENST00000563970 127 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 AL136317.1-201ENST00000612653 226 ntBASIC0.98□□□□□ -2.25
VPS4AQ9UN37 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
VPS4AQ9UN37 Y_RNA.42-201ENST00000362660 108 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 MIR100-201ENST00000385259 80 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 AL353813.1-201ENST00000440700 253 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 MIR4661-201ENST00000582720 75 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 AL162726.3-218ENST00000636401 95 ntBASIC0.97□□□□□ -2.25
VPS4AQ9UN37 RNU4-67P-201ENST00000364569 141 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 SNORD116-21-201ENST00000384507 92 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-880P-201ENST00000384526 107 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-429P-201ENST00000384582 108 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 SNORD89-201ENST00000390981 114 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU7-48P-201ENST00000458875 63 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-1194P-201ENST00000516208 104 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-977P-201ENST00000516411 103 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-1018P-201ENST00000516577 106 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU6-765P-201ENST00000516916 99 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 RNU7-156P-201ENST00000517214 74 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 AC025627.3-201ENST00000582078 182 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 MIR6857-201ENST00000613267 93 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 AC105081.1-201ENST00000617727 106 ntBASIC0.96□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.98-201ENST00000363109 102 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.328-201ENST00000365208 113 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 RNU6-1056P-201ENST00000383996 107 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 MIR193B-201ENST00000384907 83 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 RNU4-83P-201ENST00000410863 133 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 PDCD5P2-201ENST00000507570 312 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 RNU6-589P-201ENST00000516485 107 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 RNU6-521P-201ENST00000516663 105 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 CYP3A137P-201ENST00000562436 69 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 MIR548AI-201ENST00000579940 88 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 MIR6082-201ENST00000613604 109 ntBASIC0.95□□□□□ -2.26
VPS4AQ9UN37 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.95□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.35-201ENST00000362601 101 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 RNU6-1290P-201ENST00000362957 109 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.309-201ENST00000365046 111 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 RNU6-1335P-201ENST00000365426 107 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 Y_RNA.448-201ENST00000384185 108 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 SNORD105-201ENST00000386910 85 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 RNU6-679P-201ENST00000391003 106 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 MIR1912-201ENST00000410389 80 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 RPL39P25-201ENST00000449384 154 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 RNU7-102P-201ENST00000458948 62 ntBASIC0.94□□□□□ -2.26
VPS4AQ9UN37 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 217.6 ms