Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AL353813.1-201ENST00000440700 253 ntBASIC1.2□□□□□ -2.22
VSX1Q9NZR4 MIR376B-201ENST00000614515 100 ntBASIC1.2□□□□□ -2.22
VSX1Q9NZR4 AC027335.2-201ENST00000624030 375 ntBASIC1.2□□□□□ -2.22
VSX1Q9NZR4 AC023934.1-201ENST00000574529 2389 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 HSBP1P2-201ENST00000299671 229 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 MIR1-1-201ENST00000362147 71 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 RNU4-58P-201ENST00000363192 141 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 Y_RNA.140-201ENST00000363474 103 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 SNORA25.8-201ENST00000364831 128 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 Y_RNA.495-201ENST00000384435 112 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 MIR125B2-201ENST00000385128 89 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.19□□□□□ -2.22
VSX1Q9NZR4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 RNU6-765P-201ENST00000516916 99 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 RNU1-92P-201ENST00000517017 135 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 AC068338.1-201ENST00000565567 176 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 AC023827.1-201ENST00000569247 97 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 RNU6-90P-201ENST00000606352 106 ntBASIC1.19□□□□□ -2.22
VSX1Q9NZR4 MIR450A1-201ENST00000362262 91 ntBASIC1.18□□□□□ -2.22
VSX1Q9NZR4 MIR34C-201ENST00000384831 77 ntBASIC1.18□□□□□ -2.22
VSX1Q9NZR4 SNORA40.13-201ENST00000516379 120 ntBASIC1.18□□□□□ -2.22
VSX1Q9NZR4 AC138749.4-201ENST00000563970 127 ntBASIC1.18□□□□□ -2.22
VSX1Q9NZR4 MIR4491-201ENST00000581087 68 ntBASIC1.18□□□□□ -2.22
VSX1Q9NZR4 ZNF209P-201ENST00000593450 2304 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 MIR938-201ENST00000401216 83 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU4-83P-201ENST00000410863 133 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU1-123P-201ENST00000458950 160 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 UBL5P1-201ENST00000507979 193 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU6-168P-201ENST00000516189 101 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 Y_RNA.694-201ENST00000516677 117 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU6-1006P-201ENST00000516998 103 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU6-537P-201ENST00000517277 103 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 AC019288.1-201ENST00000557918 224 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 MIR4771-2-201ENST00000577758 74 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 MIR4771-1-201ENST00000582617 74 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 AL359821.1-201ENST00000605519 182 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 RNU7-10P-201ENST00000607194 63 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 uc_338.6-201ENST00000613544 171 ntBASIC1.17□□□□□ -2.22
VSX1Q9NZR4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.17□□□□□ -2.22
VSX1Q9NZR4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
VSX1Q9NZR4 Y_RNA.119-201ENST00000363301 96 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 RNA5SP133-201ENST00000363368 119 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 RNU1-124P-201ENST00000363861 145 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 MIR590-201ENST00000385008 97 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 MIR618-201ENST00000385287 98 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
VSX1Q9NZR4 MIR548G-201ENST00000408442 89 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 SNORD83.1-201ENST00000411362 77 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 BTF3P4-201ENST00000418852 495 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 RNU7-95P-201ENST00000459222 64 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 MTND5P40-201ENST00000559945 246 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 MIR4769-201ENST00000584126 77 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 AP001318.4-201ENST00000616637 121 ntBASIC1.16□□□□□ -2.22
VSX1Q9NZR4 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
VSX1Q9NZR4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
VSX1Q9NZR4 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.15□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.95-201ENST00000363079 95 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.107-201ENST00000363190 121 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 RNU6-571P-201ENST00000384128 107 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 RNU6-1307P-201ENST00000391012 103 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.588-201ENST00000391254 102 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 MIR1827-201ENST00000408549 66 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 U7.7-201ENST00000459276 60 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.15□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.659-201ENST00000515994 113 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 U6.109-201ENST00000636749 87 ntBASIC1.15□□□□□ -2.23
VSX1Q9NZR4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
VSX1Q9NZR4 MIR100-201ENST00000385259 80 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 AC004223.1-201ENST00000479840 271 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.677-201ENST00000516401 85 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 RNU6-977P-201ENST00000516411 103 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 MIR4676-201ENST00000583078 72 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 MIR3660-201ENST00000584845 100 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 SNORD92-201ENST00000585078 85 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 MIR4781-201ENST00000585250 76 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 MIR6082-201ENST00000613604 109 ntBASIC1.14□□□□□ -2.23
VSX1Q9NZR4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU6-403P-201ENST00000363163 104 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU6-1125P-201ENST00000363601 107 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.466-201ENST00000384294 113 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU6-480P-201ENST00000384332 107 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU6-364P-201ENST00000384387 107 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 SNORA40.6-201ENST00000391153 128 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 AP1B1P2-201ENST00000416196 106 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU7-40P-201ENST00000516397 64 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU7-156P-201ENST00000517214 74 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 MIR4500-201ENST00000579472 76 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 AC025627.3-201ENST00000582078 182 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 MIR3124-201ENST00000582636 67 ntBASIC1.13□□□□□ -2.23
VSX1Q9NZR4 RNU6-170P-201ENST00000362832 104 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 Y_RNA.173-201ENST00000363776 113 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 SNORD114-24-201ENST00000365029 72 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 RNU6-972P-201ENST00000391208 107 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 MTATP8P2-201ENST00000435212 202 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 SPINT5P-201ENST00000448174 155 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 snoU13.21-201ENST00000459368 105 ntBASIC1.12□□□□□ -2.23
VSX1Q9NZR4 AP003327.1-201ENST00000529684 127 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 229.4 ms