Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR371B-201ENST00000638082 66 ntBASIC0.07□□□□□ -2.4
DDX28Q9NUL7 RNU6-1020P-201ENST00000363684 107 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.193-201ENST00000363979 102 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 RNA5SP245-201ENST00000364239 121 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 SNORA75.5-201ENST00000391291 81 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 AC138749.4-201ENST00000563970 127 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 AC098479.1-201ENST00000609225 154 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 MIR6844-201ENST00000637122 62 ntBASIC0.06□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.56-201ENST00000362798 112 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.119-201ENST00000363301 96 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 SNORA42.1-201ENST00000363515 137 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.366-201ENST00000365540 102 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 RNU6-47P-201ENST00000383866 107 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.423-201ENST00000384057 113 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 RNU2-35P-201ENST00000516446 142 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 SNORD67.1-201ENST00000516618 108 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 MIR3646-201ENST00000578301 84 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 MIR4503-201ENST00000582187 83 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 MIR548AE2-201ENST00000583456 67 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 AC067863.3-201ENST00000624172 122 ntBASIC0.05□□□□□ -2.4
DDX28Q9NUL7 RNA5SP214-201ENST00000363378 118 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.307-201ENST00000365022 117 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 RNU6-196P-201ENST00000384315 107 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.497-201ENST00000384447 98 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 MTND3P2-201ENST00000438452 342 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 AC138907.4-201ENST00000570107 226 ntBASIC0.04□□□□□ -2.4
DDX28Q9NUL7 SNORA63.5-201ENST00000363548 123 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.233-201ENST00000364407 101 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.274-201ENST00000364714 101 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.793-201ENST00000411222 111 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 RNU6-240P-201ENST00000516098 97 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 AC021443.1-201ENST00000604478 211 ntBASIC0.03□□□□□ -2.4
DDX28Q9NUL7 Y_RNA.49-201ENST00000362714 112 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 RNY1P2-201ENST00000364820 117 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.299-201ENST00000364973 94 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 RNU6-187P-201ENST00000384139 106 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.452-201ENST00000384202 108 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 PCNPP3-201ENST00000393579 471 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 AC244505.6-201ENST00000452829 130 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 RNU6-1219P-201ENST00000516143 112 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 AC138869.1-201ENST00000568623 124 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 AL359881.1-201ENST00000602916 267 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 AC009779.6-201ENST00000603972 165 ntBASIC0.02□□□□□ -2.41
DDX28Q9NUL7 SNORD115-24-201ENST00000363528 82 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.362-201ENST00000365518 110 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 SNORD18B-201ENST00000365659 72 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 RNU6-429P-201ENST00000384582 108 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 RNU6-239P-201ENST00000390990 99 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 RNU6-588P-201ENST00000410281 105 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 RNU4-69P-201ENST00000410677 143 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 RNU7-164P-201ENST00000459221 62 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 MIR548H5-201ENST00000580314 60 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 MIR6759-201ENST00000638110 65 ntBASIC0.01□□□□□ -2.41
DDX28Q9NUL7 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
DDX28Q9NUL7 SNORA2A-201ENST00000383885 135 ntBASIC0□□□□□ -2.41
DDX28Q9NUL7 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
DDX28Q9NUL7 AC105081.1-201ENST00000617727 106 ntBASIC0□□□□□ -2.41
DDX28Q9NUL7 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 RNA5SP128-201ENST00000365305 116 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 MIR760-201ENST00000390220 80 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 RNU2-60P-201ENST00000517290 128 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 AC104408.1-201ENST00000605241 170 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 RNU7-10P-201ENST00000607194 63 ntBASIC-0.01□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 RNU6-726P-201ENST00000364680 107 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 RNU7-129P-201ENST00000516128 62 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 RNU7-121P-201ENST00000516604 62 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 AC130289.1-201ENST00000577321 73 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 MIR4719-201ENST00000585233 84 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 AC072026.1-201ENST00000605023 201 ntBASIC-0.02□□□□□ -2.41
DDX28Q9NUL7 RNU4-84P-201ENST00000364200 139 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 MIR610-201ENST00000385139 96 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 RNU6-127P-201ENST00000390897 107 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 MIR1270-201ENST00000459320 83 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 RNU7-123P-201ENST00000515911 60 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.03□□□□□ -2.41
DDX28Q9NUL7 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 SNORD37.2-201ENST00000391075 66 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.584-201ENST00000391090 114 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 MIR548L-201ENST00000408303 86 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 RPL39P34-201ENST00000477141 156 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 AC022559.1-201ENST00000520905 205 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 MIR4752-201ENST00000579672 72 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 MIR4290-201ENST00000583807 95 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 MIR6086-201ENST00000638065 55 ntBASIC-0.04□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 RNU6-463P-201ENST00000384340 107 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 MIR635-201ENST00000384830 98 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 MIR643-201ENST00000385267 97 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 SNORD77B-201ENST00000391112 67 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 261.8 ms