Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 Y_RNA.4-201ENST00000362333 112 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 snoU13.23-201ENST00000458863 104 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 MIR3937-201ENST00000580135 106 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 AC020891.4-201ENST00000605745 93 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 MIR8066-201ENST00000617280 78 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 MIR548BB-201ENST00000626714 66 ntBASIC2.03□□□□□ -2.08
ZKSCAN3Q9BRR0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
ZKSCAN3Q9BRR0 Y_RNA.119-201ENST00000363301 96 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 Y_RNA.191-201ENST00000363972 113 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 RNA5SP99-201ENST00000364020 114 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-571P-201ENST00000384128 107 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 AC245517.4-201ENST00000448601 281 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 SNORA25.15-201ENST00000516487 89 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR4666B-201ENST00000578142 81 ntBASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
ZKSCAN3Q9BRR0 Y_RNA.57-201ENST00000362806 113 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 SNORD48-201ENST00000364953 64 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR1255A-201ENST00000408338 113 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 AC108210.2-201ENST00000503681 201 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR3664-201ENST00000579074 99 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR4524B-201ENST00000581569 115 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 AC006160.2-201ENST00000637708 154 ntBASIC2.01□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU1-17P-201ENST00000363022 152 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-654P-201ENST00000364373 107 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-580P-201ENST00000365159 107 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR18B-201ENST00000454574 71 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 SNORD13-201ENST00000459299 104 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-850P-201ENST00000516934 103 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 MIR3198-2-201ENST00000577868 80 ntBASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-53P-201ENST00000365367 106 ntBASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 Y_RNA.437-201ENST00000384113 113 ntBASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-519P-201ENST00000410590 108 ntBASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 RNA5SP225-201ENST00000410874 135 ntBASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 uc_338.6-201ENST00000613544 171 ntBASIC1.99□□□□□ -2.09
ZKSCAN3Q9BRR0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 RNA5SP190-201ENST00000365222 118 ntBASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-787P-201ENST00000384032 107 ntBASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 Y_RNA.607-201ENST00000410597 98 ntBASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 RNA5SP395-201ENST00000516567 118 ntBASIC1.98□□□□□ -2.09
ZKSCAN3Q9BRR0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 RNA5SP95-201ENST00000410319 137 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU4-83P-201ENST00000410863 133 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 BX276092.1-201ENST00000427368 251 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 RNU6-165P-201ENST00000517170 99 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 AL512598.1-201ENST00000610158 273 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
ZKSCAN3Q9BRR0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR519C-201ENST00000385053 87 ntBASIC1.96□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORD93-201ENST00000408813 74 ntBASIC1.96□□□□□ -2.1
ZKSCAN3Q9BRR0 AL512310.8-201ENST00000550183 120 ntBASIC1.96□□□□□ -2.1
ZKSCAN3Q9BRR0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU4-58P-201ENST00000363192 141 ntBASIC1.95□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORD115-27-201ENST00000364430 82 ntBASIC1.95□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORA17.3-201ENST00000391159 129 ntBASIC1.95□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR4491-201ENST00000581087 68 ntBASIC1.95□□□□□ -2.1
ZKSCAN3Q9BRR0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR676-201ENST00000390702 67 ntBASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-279P-201ENST00000391297 101 ntBASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR502-201ENST00000606349 86 ntBASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 AL353997.5-201ENST00000618886 171 ntBASIC1.94□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORD115-37-201ENST00000363768 82 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 Y_RNA.313-201ENST00000365095 103 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU1-36P-201ENST00000365130 165 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 Y_RNA.588-201ENST00000391254 102 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-1054P-201ENST00000411293 104 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 AC087499.7-201ENST00000441958 109 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR4769-201ENST00000584126 77 ntBASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
ZKSCAN3Q9BRR0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 Y_RNA.648-201ENST00000459455 110 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 AC093729.1-201ENST00000513074 128 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-531P-201ENST00000516694 104 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 MIR4422-201ENST00000581938 83 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 AC012493.3-201ENST00000604494 112 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 AL161722.3-201ENST00000605789 2983 ntBASIC1.92□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-524P-201ENST00000384270 107 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORA72.6-201ENST00000384520 129 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU1-78P-201ENST00000391248 165 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORD4B-201ENST00000459083 72 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 AC008834.1-201ENST00000511612 175 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-1194P-201ENST00000516208 104 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 SNORA25.16-201ENST00000516741 121 ntBASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.91□□□□□ -2.1
ZKSCAN3Q9BRR0 RNU6-403P-201ENST00000363163 104 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 RNU6-1254P-201ENST00000391266 104 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR1236-201ENST00000408340 102 ntBASIC1.9□□□□□ -2.11
ZKSCAN3Q9BRR0 MIR1257-201ENST00000408490 117 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 212.5 ms