Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 Y_RNA.567-201ENST00000384736 106 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 MIR100-201ENST00000385259 80 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 BX276092.1-201ENST00000427368 251 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 RNU6-548P-201ENST00000517083 115 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 AL353997.5-201ENST00000618886 171 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.46□□□□□ -2.18
CCDC140Q96MF4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC140Q96MF4 Y_RNA.13-201ENST00000362403 112 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 RNU6-53P-201ENST00000365367 106 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 MIR125B2-201ENST00000385128 89 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 SNORD12-201ENST00000391002 90 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 AC003989.2-201ENST00000440224 169 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 RNU7-156P-201ENST00000517214 74 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 AC019288.1-201ENST00000557918 224 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 MIR4676-201ENST00000583078 72 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.45□□□□□ -2.18
CCDC140Q96MF4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC140Q96MF4 MIR1-1-201ENST00000362147 71 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 MIR26B-201ENST00000362251 77 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNU4-58P-201ENST00000363192 141 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNA5SP99-201ENST00000364020 114 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNU6-1131P-201ENST00000364955 107 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNU6-364P-201ENST00000384387 107 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNU6-977P-201ENST00000516411 103 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNA5SP364-201ENST00000516938 78 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC140Q96MF4 MIR5582-201ENST00000579697 68 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 AC013244.2-201ENST00000603396 103 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 AC012493.3-201ENST00000604494 112 ntBASIC1.44□□□□□ -2.18
CCDC140Q96MF4 RNU6-1255P-201ENST00000363434 112 ntBASIC1.43□□□□□ -2.18
CCDC140Q96MF4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
CCDC140Q96MF4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.43□□□□□ -2.18
CCDC140Q96MF4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC140Q96MF4 SUMO2P12-201ENST00000405924 140 ntBASIC1.43□□□□□ -2.18
CCDC140Q96MF4 AC067940.1-201ENST00000458411 300 ntBASIC1.43□□□□□ -2.18
CCDC140Q96MF4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC140Q96MF4 RNU6-295P-201ENST00000516901 104 ntBASIC1.43□□□□□ -2.18
CCDC140Q96MF4 SNORA16.1-201ENST00000364597 132 ntBASIC1.42□□□□□ -2.18
CCDC140Q96MF4 MIR488-201ENST00000365739 83 ntBASIC1.42□□□□□ -2.18
CCDC140Q96MF4 Y_RNA.466-201ENST00000384294 113 ntBASIC1.42□□□□□ -2.18
CCDC140Q96MF4 RNU6-813P-201ENST00000384691 107 ntBASIC1.42□□□□□ -2.18
CCDC140Q96MF4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.42□□□□□ -2.18
CCDC140Q96MF4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
CCDC140Q96MF4 SNORD26-201ENST00000384147 75 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 RNY1P7-201ENST00000384743 110 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 MIR583-201ENST00000384846 75 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 MIR9-3-201ENST00000385084 90 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 U8.13-201ENST00000390842 128 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 SNORA26.9-201ENST00000391322 122 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 Y_RNA.705-201ENST00000516862 110 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 RNU6-158P-201ENST00000517104 100 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 MIR4439-201ENST00000583746 80 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 AC103810.7-201ENST00000607821 91 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 MIR6082-201ENST00000613604 109 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 U7.3-201ENST00000616123 62 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 AC027335.2-201ENST00000624030 375 ntBASIC1.41□□□□□ -2.18
CCDC140Q96MF4 HSBP1P2-201ENST00000299671 229 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 MIR101-2-201ENST00000362195 79 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.342-201ENST00000365352 113 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 MIR938-201ENST00000401216 83 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 RNA5SP182-201ENST00000516064 82 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 AL157834.3-201ENST00000615543 103 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 MALAT1.1-201ENST00000618249 95 ntBASIC1.4□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.173-201ENST00000363776 113 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 SNORA25.8-201ENST00000364831 128 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 MIR520F-201ENST00000384824 87 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 SNORD89-201ENST00000390981 114 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 BTF3P4-201ENST00000418852 495 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 AC023790.1-201ENST00000482174 347 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 RNA5SP458-201ENST00000516188 119 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 RNU6-850P-201ENST00000516934 103 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 MIR4419B-201ENST00000577260 68 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 MIR8066-201ENST00000617280 78 ntBASIC1.39□□□□□ -2.19
CCDC140Q96MF4 RNU6-369P-201ENST00000362515 102 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.43-201ENST00000362670 111 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 RNU6-49P-201ENST00000384256 107 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 SNORA40.18-201ENST00000391200 128 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 RNU6-972P-201ENST00000391208 107 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 RPS29P23-201ENST00000458635 123 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 RNU6-1194P-201ENST00000516208 104 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 MIR4804-201ENST00000581683 73 ntBASIC1.38□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.96-201ENST00000363092 109 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.190-201ENST00000363964 101 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.220-201ENST00000364244 109 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.290-201ENST00000364879 114 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 MIR181B2-201ENST00000385004 89 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 RNU6-887P-201ENST00000410660 100 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 RNU7-102P-201ENST00000458948 62 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 SNORD124-201ENST00000459577 104 ntBASIC1.37□□□□□ -2.19
CCDC140Q96MF4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC140Q96MF4 RNU6-1244P-201ENST00000363614 108 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 RNU1-119P-201ENST00000391122 165 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 AL603825.1-201ENST00000438481 80 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 RNU7-56P-201ENST00000458744 62 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.697-201ENST00000516776 113 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 MIR6845-201ENST00000613182 61 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 AC084768.2-201ENST00000622736 221 ntBASIC1.36□□□□□ -2.19
CCDC140Q96MF4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
CCDC140Q96MF4 Y_RNA.57-201ENST00000362806 113 ntBASIC1.35□□□□□ -2.19
CCDC140Q96MF4 RNU6-1125P-201ENST00000363601 107 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms